PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK03600.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 220aa    MW: 24963.3 Da    PI: 9.3141
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK03600.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.92.3e-10427226
               -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
               k   Cr+f+r G C+yG rCkF H+
  PK03600.1  4 KKDVCRNFQR-GSCQYGQRCKFLHV 27
               6679******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.563229IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-4228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6329IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-8427IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-8426IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MPVKKDVCRN FQRGSCQYGQ RCKFLHVTSS QQQQRPNNVF SYQQQQQQQK PSNPYGFGVQ  60
NNPQPKGAGD FGSKPNQHKP FQNSWTRSSS TPNANNTSES QSQTTNHKCT DRESCRRVAV  120
EDFQHERPLW RLTCYGHWKN APCDIVGDIS YEELRMAAYD DAKRGLSLQT IVDRERNLVN  180
SKVIEFENLC KSGPVPRNST PANQTFPGTA PNAFAQSAQX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015869714.16e-99zinc finger CCCH domain-containing protein 16-like isoform X3
RefseqXP_015869720.16e-99zinc finger CCCH domain-containing protein 16-like isoform X3
RefseqXP_015870020.16e-99zinc finger CCCH domain-containing protein 16-like isoform X3
RefseqXP_015870074.16e-99zinc finger CCCH domain-containing protein 16-like isoform X3
RefseqXP_015870079.16e-99zinc finger CCCH domain-containing protein 16-like isoform X3
RefseqXP_015870084.16e-99zinc finger CCCH domain-containing protein 16-like isoform X3
SwissprotQ9FWS32e-68C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLA0A2P5FR771e-121A0A2P5FR77_TREOI; Zinc finger, CCCH-type
STRINGXP_008380621.12e-87(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46002333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.12e-70C3H family protein