PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK03600.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 246aa    MW: 27910 Da    PI: 8.6668
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK03600.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.72.7e-10730226
               -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
               k   Cr+f+r G C+yG rCkF H+
  PK03600.2  7 KKDVCRNFQR-GSCQYGQRCKFLHV 30
               6679******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.88E-6432IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-4531IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.563532IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-9629IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-8730IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
DNQMPVKKDV CRNFQRGSCQ YGQRCKFLHV TSSQQQQRPN NVFSYQQQQQ QQKPSNPYGF  60
GVQNNPQPKG AGDFGSKPNQ HKPFQNSWTR SSSTPNANNT SESQSQTTNH KNFFSATMLM  120
LLISFIPLHQ VTLLISYEFL CLQGVQIANL ADXVAVEDFQ HERPLWRLTC YGHWKNAPCD  180
IVGDISYEEL RMAAYDDAKR GLSLQTIVDR ERNLVNSKVI EFENLCKSGP VPRNSTPANQ  240
TFPGTA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024925452.11e-80zinc finger CCCH domain-containing protein 16-like isoform X1
RefseqXP_024925454.11e-80zinc finger CCCH domain-containing protein 16-like isoform X1
RefseqXP_024925456.11e-80zinc finger CCCH domain-containing protein 16-like isoform X1
RefseqXP_024925457.11e-80zinc finger CCCH domain-containing protein 16-like isoform X1
RefseqXP_024925524.11e-80zinc finger CCCH domain-containing protein 16-like isoform X1
RefseqXP_024925537.11e-80zinc finger CCCH domain-containing protein 16-like isoform X1
RefseqXP_024925540.11e-80zinc finger CCCH domain-containing protein 16-like isoform X1
RefseqXP_024925542.11e-80zinc finger CCCH domain-containing protein 16-like isoform X1
RefseqXP_024925543.11e-80zinc finger CCCH domain-containing protein 16-like isoform X1
TrEMBLA0A2P5FR771e-100A0A2P5FR77_TREOI; Zinc finger, CCCH-type
STRINGXP_008224558.14e-71(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46002333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.12e-55C3H family protein