PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK03912.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HD-ZIP
Protein Properties Length: 193aa    MW: 23035.8 Da    PI: 7.5186
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK03912.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.94.7e-202981456
               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                ++f++eq+++Le+ Fe++ ++  +++ +LA++lgL+ +qV +WFqNrRa++k
  PK03912.1 29 QRRFSDEQIKQLESIFESETKLEPKKKIQLARELGLQPKQVAIWFQNRRARWK 81
               579*************************************************9 PP
2HD-ZIP_I/II121.35e-3928119293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ++rr+s+eq+k+LE+ Fe+e+kLep++K +lareLglqp+qva+WFqnrRAR+k+kq+E+d++ L+++yd+l+++ ++L++e+++L  +l++
    PK03912.1  28 NQRRFSDEQIKQLESIFESETKLEPKKKIQLARELGLQPKQVAIWFQNRRARWKSKQIEQDFKNLRAEYDNLVSQFDSLKQEKDSLVLQLQR 119
                  68************************************************************************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.28E-191484IPR009057Homeodomain-like
PROSITE profilePS5007117.5722383IPR001356Homeobox domain
SMARTSM003892.0E-172687IPR001356Homeobox domain
CDDcd000866.54E-142984No hitNo description
PfamPF000462.0E-172981IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.9E-202989IPR009057Homeodomain-like
PRINTSPR000316.1E-65463IPR000047Helix-turn-helix motif
PROSITE patternPS0002705881IPR017970Homeobox, conserved site
PRINTSPR000316.1E-66379IPR000047Helix-turn-helix motif
PfamPF021837.4E-1383124IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MESGDQFPSF QHSLIPISKK KKNNNSNNQR RFSDEQIKQL ESIFESETKL EPKKKIQLAR  60
ELGLQPKQVA IWFQNRRARW KSKQIEQDFK NLRAEYDNLV SQFDSLKQEK DSLVLQLQRL  120
KDLLLSKTNE MKKDKRLDEK EEEENKYRNT NSKNEAETRF EDRGVLMATT SNYIEDLEQQ  180
GYENLDSLSL ENW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17583RRARWKSKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001281285.18e-52homeobox-leucine zipper protein ATHB-12-like
RefseqXP_007218369.16e-52homeobox-leucine zipper protein ATHB-12
SwissprotP468978e-49ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A2P5DFD96e-61A0A2P5DFD9_PARAD; Aldo/keto reductase
STRINGXP_008376788.13e-51(Malus domestica)
STRINGEMJ195682e-51(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.22e-40homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]