PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK03912.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HD-ZIP
Protein Properties Length: 103aa    MW: 12345.1 Da    PI: 10.6404
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK03912.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.91.1e-201668456
               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                ++f++eq+++Le+ Fe++ ++  +++ +LA++lgL+ +qV +WFqNrRa++k
  PK03912.2 16 QRRFSDEQIKQLESIFESETKLEPKKKIQLARELGLQPKQVAIWFQNRRARWK 68
               579*************************************************9 PP
2HD-ZIP_I/II122.52e-3915101288
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                  ++rr+s+eq+k+LE+ Fe+e+kLep++K +lareLglqp+qva+WFqnrRAR+k+kq+E+d++ L+++yd+l+++ ++L++e+++L 
    PK03912.2  15 NQRRFSDEQIKQLESIFESETKLEPKKKIQLARELGLQPKQVAIWFQNRRARWKSKQIEQDFKNLRAEYDNLVSQFDSLKQEKDSLV 101
                  68*********************************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.5721070IPR001356Homeobox domain
SuperFamilySSF466895.99E-191071IPR009057Homeodomain-like
SMARTSM003892.0E-171374IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-201676IPR009057Homeodomain-like
PfamPF000464.9E-181668IPR001356Homeobox domain
CDDcd000862.74E-131671No hitNo description
PRINTSPR000312.6E-64150IPR000047Helix-turn-helix motif
PROSITE patternPS0002704568IPR017970Homeobox, conserved site
PRINTSPR000312.6E-65066IPR000047Helix-turn-helix motif
PfamPF021837.2E-1170102IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
LIPISKKKKN NNSNNQRRFS DEQIKQLESI FESETKLEPK KKIQLARELG LQPKQVAIWF  60
QNRRARWKSK QIEQDFKNLR AEYDNLVSQF DSLKQEKDSL VLQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16270RRARWKSKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021805522.11e-47homeobox-leucine zipper protein ATHB-12-like
SwissprotP468975e-45ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A314XMA34e-46A0A314XMA3_PRUYE; Homeobox-leucine zipper protein ATHB-12
STRINGEMJ195681e-46(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-42homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]