PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK04103.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 378aa    MW: 41702.1 Da    PI: 7.4982
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK04103.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.4e-0887111126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt+lC+ f++ GtC+y ++C+FaH+
  PK04103.1  87 FKTKLCCKFRA-GTCPYISNCNFAHS 111
                69*********.*************8 PP
2zf-CCCH18.53.5e-06161186126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                yk + C+ f+    C+yGd+C+F H+
  PK04103.1 161 YKGRHCKKFYTEEGCPYGDSCTFLHD 186
                77888********************7 PP
3zf-CCCH42.21.3e-13255280126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt++C+ +  tG+C++G++C+FaHg
  PK04103.1 255 WKTRICNKWELTGYCPFGSKCHFAHG 280
                8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.9E-1484119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-884117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.28186113IPR000571Zinc finger, CCCH-type
SMARTSM003560.001686112IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-687111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-9158188IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-7159188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098160188IPR000571Zinc finger, CCCH-type
SMARTSM003560.086160187IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-16251284IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-9252285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544254282IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-9254281IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-11255280IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MEYGRESVVQ VIGTENWSGD QAIWATEDDY RAWNNNSDTS GDTFSNSNYE QRQSQSRSGS  60
EPPNKKSKNS QDVTSSNRSK AIGKMFFKTK LCCKFRAGTC PYISNCNFAH SIEELRRPPP  120
NWQEIVAAHE EEKGVSSEPR EEFQIPSVGS STFVVETPRS YKGRHCKKFY TEEGCPYGDS  180
CTFLHDEQSK NRESVAISLG PGGYGGAPSG TNNATNNSNS NNTTTTTNNN NNNSNNNNNN  240
NNNNNSNSNN KPSNWKTRIC NKWELTGYCP FGSKCHFAHG SAELHRYGGG LVETDARDPS  300
SVPTENKQQG GGVTPKAAAD TVVASSVPSV PHSDVFHLGV PSQRSSIVNQ RPGHRAHQKW  360
KGPDKISRIY GDWIDDIE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010096556.10.0zinc finger CCCH domain-containing protein 12 isoform X1
RefseqXP_024021503.10.0zinc finger CCCH domain-containing protein 12 isoform X1
SwissprotQ9LQM31e-131C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A2P5EPG80.0A0A2P5EPG8_TREOI; Zinc finger, CCCH-type
STRINGXP_010096556.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-124C3H family protein