PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK04475.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WRKY
Protein Properties Length: 425aa    MW: 48089 Da    PI: 6.6734
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK04475.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.84.7e-33246303259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+
  PK04475.1 246 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQRCTVKKRVERSFQDPSIVITTYEGQHNHH 303
                8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-34230305IPR003657WRKY domain
SuperFamilySSF1182906.54E-29238305IPR003657WRKY domain
PROSITE profilePS5081132.053240305IPR003657WRKY domain
SMARTSM007742.0E-38245304IPR003657WRKY domain
PfamPF031067.9E-26246303IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
PYRPYDPFNY EIDGRSCSSL LFPFLMNNNN NNQSSSIMYN NIPNINSNNN NNNNNYLMMS  60
NNTSNITSYT DCLNGSSMDQ YNTLSRAFDI SCSAPSSSDV VSQILDNNNH HQHDIIDTST  120
TTTPNNDNHN AQLFCTNPVK ADHQSVGTSE NPSTPNSSIS ASSSNDGAAT TVTAGPEEDS  180
GKSNNNKKEN DEDEEEDEED NNNKVKGSDD EEKTAKKVSC KTKKKEKKPR EPRFAFLTKS  240
EIDHLEDGYR WRKYGQKAVK NSPYPRSYYR CTTQRCTVKK RVERSFQDPS IVITTYEGQH  300
NHHCPATLRG NAAAMLSPSF LASAGTLSPN NLPHDFFTQF LPITNNNNNI SNIHQHQQQH  360
HNLNNHDHII HHQGEAPSNN SMLYSNLNTT HHHHQYRQQL HQVPDFGLLQ DLVPSFNRHH  420
NKQDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-272383061078Probable WRKY transcription factor 4
2lex_A8e-272383061078Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818002e-41LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132552e-41LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102144.11e-116probable WRKY transcription factor 71 isoform X1
TrEMBLA0A2P5DIE91e-137A0A2P5DIE9_TREOI; WRKY domain containing protein
STRINGXP_010102144.11e-115(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.14e-49WRKY DNA-binding protein 71