PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK04509.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 85aa    MW: 9583.25 Da    PI: 10.5615
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK04509.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.000471029625
               HHHHHHHHHHHHHHHHHHHC CS
        HLH  6 nerErrRRdriNsafeeLre 25
                erEr R+d i s f+ Lre
  PK04509.1 10 DERERERMDAIDSVFDPLRE 29
               58****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1034568.63E-132181IPR023391Protein translocase SecE domain
Gene3DG3DSA:1.20.5.8201.8E-72374IPR023391Protein translocase SecE domain
HamapMF_0042212.5792580IPR022943Preprotein translocase subunit SecE
TIGRFAMsTIGR003271.1E-152782IPR008158Protein translocase SEC61 complex, gamma subunit
PfamPF005842.8E-122981IPR001901Protein translocase complex, SecE/Sec61-gamma subunit
PROSITE patternPS0106703058IPR001901Protein translocase complex, SecE/Sec61-gamma subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006605Biological Processprotein targeting
GO:0016020Cellular Componentmembrane
GO:0015450Molecular FunctionP-P-bond-hydrolysis-driven protein transmembrane transporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
VKAVAGKNGD ERERERMDAI DSVFDPLREF SKDSIRLVKR CHKPDRKEFS KVALRTAIGF  60
VVMGFVGFFV KLIFIPINNI IVGSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2wwb_B2e-291783167PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA
3j7q_22e-291783167Sec61 gamma subunit
3j7r_22e-291783167Sec61 gamma subunit
4cg5_B2e-291783167PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA
4cg6_B2e-291783167PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA
4cg7_B2e-291783167PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNecessary for protein translocation in the endoplasmic reticulum. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007215225.22e-42uncharacterized protein LOC18784392
SwissprotP383851e-40SC61G_ORYSJ; Protein transport protein Sec61 subunit gamma
TrEMBLA0A251Q7Z85e-41A0A251Q7Z8_PRUPE; Uncharacterized protein
STRINGGorai.007G073400.16e-41(Gossypium raimondii)
STRINGAES997258e-41(Medicago truncatula)
STRINGXP_007148544.15e-41(Phaseolus vulgaris)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sasaki T, et al.
    Toward cataloguing all rice genes: large-scale sequencing of randomly chosen rice cDNAs from a callus cDNA library.
    Plant J., 1994. 6(4): p. 615-24
    [PMID:7987417]