PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK04548.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

LBD

Protein Properties

Length: 184aa MW: 20131.3 Da PI: 7.0313

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK04548.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	58.5	1.9e-18	28	103	25	100
DUF260 25 eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +q++++ +++k++G++ +++l++a p ++r+d+++sl+yeA+ r+ +P++G++g++++++++l+++++e++l++e+ PK04548.1 28 SQSNATLFLAKFYGRAGLINLINAGPLHRRPDIFKSLLYEACGRIVNPISGSTGLVQSGSWHLCEAAVEAVLRGEP 103 678999***************************************************************9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.156	2	104	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-13	28	97	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MDVEFSGEGA PRTVPSDLVF SGSNPXLSQS NATLFLAKFY GRAGLINLIN AGPLHRRPDI 60 FKSLLYEACG RIVNPISGST GLVQSGSWHL CEAAVEAVLR GEPIKPVSDE LVGNLSCDIR 120 HVAKRESSVL CDRLKVQTRQ RLRRKKVAKV EESETEFGTE SAHLVLSGPP VSHDSEEETR 180 LQQX

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	149	RLRRKKVAKV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015882967.1	9e-52	LOB domain-containing protein 40-like
Swissprot	Q9ZW96	1e-43	LBD40_ARATH; LOB domain-containing protein 40
TrEMBL	A0A2P5F9N5	2e-73	A0A2P5F9N5_TREOI; Lateral organ boundaries domain containing protein
STRING	EOY21024	2e-47	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF25395	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67100.1	4e-46	LOB domain-containing protein 40