PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK05014.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

ERF

Protein Properties

Length: 76aa MW: 8783.43 Da PI: 9.5271

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK05014.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.6	1.5e-18	31	75	2	49
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaa 49 +y+GVr+++ +g+++AeIrdp + k r++lg+++ta +Aaka+++a PK05014.1 31 HYRGVRRRP-WGKYAAEIRDP---NrKGSRVWLGTYDTAIDAAKAYDRA 75 7******.******9...6566*****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	9.00E-19	30	75	No hit	No description
Pfam	PF00847	1.2E-12	31	75	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.5E-24	31	75	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.336	31	76	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.9E-17	31	75	IPR016177	DNA-binding domain
SMART	SM00380	2.8E-15	31	76	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-10	32	43	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-10	55	71	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 76 aa Download sequence Send to blast
LPSKTTQWIQ FGDPNPRESV EEKASEEDQA HYRGVRRRPW GKYAAEIRDP NRKGSRVWLG 60 TYDTAIDAAK AYDRAX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	4e-20	31	75	5	49	ATERF1
3gcc_A	4e-20	31	75	5	49	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:9756931}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269\|PubMed:10715325}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018824977.1	9e-32	PREDICTED: ethylene-responsive transcription factor 5-like
Swissprot	O80341	1e-29	EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBL	A0A2P5CVM2	5e-32	A0A2P5CVM2_TREOI; AP2/ERF transcription factor
STRING	XP_010104815.1	8e-31	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1085	34	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47230.1	5e-32	ethylene responsive element binding factor 5

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]