PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK05226.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 659aa    MW: 72272 Da    PI: 7.1125
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK05226.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07254274526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+ f++ G C+ Gd+C +aHg
  PK05226.1 254 PCPEFRK-GSCQKGDSCEYAHG 274
                8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.205.0E-1517168IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.51E-1517150IPR020683Ankyrin repeat-containing domain
PfamPF127963.6E-957128IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.46961139IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00146191IPR002110Ankyrin repeat
PROSITE profilePS500888.636185IPR002110Ankyrin repeat
CDDcd002042.41E-1363139No hitNo description
SMARTSM002480.0796128IPR002110Ankyrin repeat
PROSITE profilePS500889.56496131IPR002110Ankyrin repeat
PROSITE profilePS5010313.544249276IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5249275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4254275IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-5254274IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.503284308IPR000571Zinc finger, CCCH-type
SMARTSM0035644284307IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MESEFPKENN GVFSKCSVLL ELSASDDLEA FRSTIEEKGI NVDQTSFWYG RRIGSKKMGF  60
EERTPLMIAA MFGSTKVLKY IIDSGMVDVN RVCGSDKVTA LHCATSGASS SSLEAVKLLL  120
EASADVDLVN AYGNKAIDLL GQGFKWPCSS RRKAMEMLLR GETNSVTEDE EDQFRVGSPL  180
SSRDGGEKKE YPIDVSLPDI NNGMYGSDDF RMYSFKIKPC SRAYSHDWTE CPFVHPGENA  240
RRRDPRKYPY SCVPCPEFRK GSCQKGDSCE YAHGVFESWL HPAQYRTRLC KDETGCTRKV  300
CFFAHKHDEL RPVYASTGSA MPSPRSLGVS ASDMATLSPL ALGPSSMPLP ATSTPPMSPL  360
ANSSSPKNGG LWQNKANHNT PPALQLPGSR LKTALCARDL GLEMELLGME SHANQQQHQQ  420
QQFLLDEISR LSSPSYSKQT NLDDLFGSLD PSVLSQMQGF SLKSSTQTQL QSPTGHQIRQ  480
NNMNQLRGSY PTNNMNMSSS PVRKPTTFGF DSAGSMAAAV MNSRSSAFAK RSQSFVDRGA  540
ATHLGYTAAA NSASSMMSSS SLSDWSSPNG KLDWAVQGDE LNKLRKSASF GFRNNNGGIA  600
SAASLRPSTI DEPDVSWVNS LVKDVSSDRS GHYNLNKGDR EVLPPWVEQL YIEQEQMVA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010101427.20.0zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A2P5E0C20.0A0A2P5E0C2_PARAD; Transmembrane protein
STRINGXP_010101427.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein