PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK05329.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

FAR1

Protein Properties

Length: 202aa MW: 23036.2 Da PI: 8.4684

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK05329.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.3	2.6e-18	43	124	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY++YA++ GF +r+ +s+ks+r+g+i++r + C g +++++k ++ +r C+a++ +k+ek+g w+v k+++eHnH+l PK05329.1 43 FYDDYARQKGFLTRVLSSRKSERDGSIISRGLGCR--GLPDSRTKV----DIQQGRQRDVCTAMILLKREKNGIWVVRKFVSEHNHPL 124 9*******************************6..666666555....5677788999************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.7E-16	43	124	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MGDGVERIET YAGESSAVEV EGGSDVELHE GMEFESEEAG RAFYDDYARQ KGFLTRVLSS 60 RKSERDGSII SRGLGCRGLP DSRTKVDIQQ GRQRDVCTAM ILLKREKNGI WVVRKFVSEH 120 NHPLGIELQK GHRILDDKDK KIQELTAELR VKKRLSAAYR EQLLAVLKDV EEHNGNVSNK 180 VKLVYENLRK LESKMQQPLC HR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015886954.2	2e-86	protein FAR1-RELATED SEQUENCE 2-like
Refseq	XP_015886990.2	3e-86	protein FAR1-RELATED SEQUENCE 2-like
TrEMBL	A0A2P5ESZ0	1e-109	A0A2P5ESZ0_TREOI; FHY3/FAR1 family
STRING	EMJ28399	5e-78	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	3e-50	FAR1 family protein