PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK05401.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family FAR1
Protein Properties Length: 702aa    MW: 80813.6 Da    PI: 7.4774
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK05401.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR196.53e-3052154190
       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                +fYn+YAke+GFsvr+++ ++sk++++i++r+f+Cskeg+r++++ k              +k+rr r+ tr gC+a ++v+k++dgkw v+kle+eHnH
  PK05401.1  52 NFYNAYAKEIGFSVRVNSYYRSKKDNSIISREFCCSKEGFRRDRRAKrkgsgsdldtvcnGVKRRRCRPITREGCRALMTVRKRDDGKWFVAKLEKEHNH 151
                6******************************************99999***********99999************************************ PP

       FAR1  88 ela 90 
                el+
  PK05401.1 152 ELV 154
                *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.4E-2752154IPR004330FAR1 DNA binding domain
PfamPF105513.0E-33273366IPR018289MULE transposase domain
PROSITE profilePS5096610.892555591IPR007527Zinc finger, SWIM-type
PfamPF044342.8E-9559588IPR007527Zinc finger, SWIM-type
SMARTSM005757.2E-8566593IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MEEVEEQSKE MADSYVGIEE VLNEYCVADV VEAPLRLPTL GMEFSSEDDA RNFYNAYAKE  60
IGFSVRVNSY YRSKKDNSII SREFCCSKEG FRRDRRAKRK GSGSDLDTVC NGVKRRRCRP  120
ITREGCRALM TVRKRDDGKW FVAKLEKEHN HELVTPTMRQ FLRSHKLECD QNKSLSDSIG  180
SPTLSISSSL NGLADEDGNS FGKMSFSNVN YIGRGRLSSF GIDAQSLLGF FKIMQANDSS  240
FYYAIQVDEE DRLSSVFWVD TRSRIAYSCF SDVVAFDTTY QVNQYKMPFA PFTGVNHHKQ  300
SMLFGCALLA DETESTFIWL FTTWLEAMSG RQPGLIITDY DSTIGRAVQQ VFPHSKHRYC  360
KWHIMRKLPK EMGLVYGALP RTFQMEFETC VNKNESPDEF ESTWQGLLDK YNLRGNDWLQ  420
SLYIDRKLWV PILVRDTFFA GMYGAQRSGS VNSLFHGYVN AGTTLQDFAE QYEKALNDQY  480
EKEAKAEFET FYTKPVLKTP LPVEKQAAEL YTRKIFSMFQ DEVFESLVLA VKLYGDEEGT  540
ARYEVARFDE RHKVYVVEFR VNKQIATCDC KMFEFEGIIC RHVLAVFKTT NVFMLPQHYI  600
LKRWTRSAKD EAVSDEFSRF GNQSSSHKGK NLQYNILYQE AIKCAEEGMA SDHIFKLALN  660
ALREARIKIV GAKKNVIHTP KLETMVSSPS KQDDNNTKIT VR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197116KRKGSGSDLDTVCNGVKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024928240.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_024928241.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_024928242.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA5AFF70.0A5AFF7_VITVI; Uncharacterized protein
STRINGVIT_14s0108g01540.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5