PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK05449.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 60aa    MW: 6825.54 Da    PI: 9.3457
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK05449.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.8e-07218925
               GGGTS--TTTTT-SS-S CS
    zf-CCCH  9 fartGtCkyGdrCkFaH 25
               +++ G C++GdrC++ H
  PK05449.1  2 YFKIGACRHGDRCSRLH 18
               8999************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.995121IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-4218IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 60 aa     Download sequence    Send to blast
XYFKIGACRH GDRCSRLHTK PSISPTLLLS NMYQRPDMLT TPGVDTQGQS LDPRKIQDNF
Functional Description ? help Back to Top
Source Description
UniProtNecessary for the splicing of pre-mRNA (By similarity). Probably active at the 3' splice sites. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010096852.13e-35splicing factor U2af small subunit B
RefseqXP_010113116.12e-37splicing factor U2af small subunit B
SwissprotQ9S7092e-29U2AFA_ARATH; Splicing factor U2af small subunit A
TrEMBLA0A2P5BW192e-34A0A2P5BW19_TREOI; U2 auxiliary factor small subunit
TrEMBLA0A2P5C4W42e-34A0A2P5C4W4_PARAD; U2 auxiliary factor small subunit
TrEMBLW9SF684e-36W9SF68_9ROSA; Splicing factor U2af small subunit A
STRINGXP_010096852.11e-34(Morus notabilis)
STRINGXP_010113116.17e-37(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2540922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44785.11e-17C3H family protein
Publications ? help Back to Top
  1. Day IS, et al.
    Interactions of SR45, an SR-like protein, with spliceosomal proteins and an intronic sequence: insights into regulated splicing.
    Plant J., 2012. 71(6): p. 936-47
    [PMID:22563826]
  2. Kim DW,Jeon SJ,Hwang SM,Hong JC,Bahk JD
    The C3H-type zinc finger protein GDS1/C3H42 is a nuclear-speckle-localized protein that is essential for normal growth and development in Arabidopsis.
    Plant Sci., 2016. 250: p. 141-153
    [PMID:27457991]
  3. Park HY, et al.
    The Arabidopsis splicing factors, AtU2AF65, AtU2AF35, and AtSF1 shuttle between nuclei and cytoplasms.
    Plant Cell Rep., 2017. 36(7): p. 1113-1123
    [PMID:28432478]