PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK05484.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

ZF-HD

Protein Properties

Length: 81aa MW: 8514.01 Da PI: 4.578

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK05484.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	32.8	1.6e-10	59	80	3	24
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDG 24 k rY+eC+kNhA+ +Gg+a+DG PK05484.1 59 KPRYRECQKNHAVGMGGYALDG 80 679******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	0.001	61	80	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.4E-7	61	80	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	14.327	62	81	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 81 aa Download sequence Send to blast
MEFEDHEEHD EEMEMAASYD SLGNSGSGRV KMPSSGGVAT AAAGAGEGVM SQSASQPRKP 60 RYRECQKNHA VGMGGYALDG X

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023876724.1	7e-23	zinc-finger homeodomain protein 2-like isoform X1
TrEMBL	A0A2P5ADF1	2e-30	A0A2P5ADF1_PARAD; Octamer-binding transcription factor
STRING	XP_008385680.1	3e-19	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31200	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18350.1	3e-06	homeobox protein 24