PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK05732.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family G2-like
Protein Properties Length: 174aa    MW: 20355 Da    PI: 10.3939
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK05732.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.58.2e-301972255
    G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
               prlrWtp+LHe Fv+ v+ LGG++kAtPk+il++m+vkgL ++hvkSHLQ+YR 
  PK05732.1 19 PRLRWTPQLHELFVDSVRILGGKHKATPKRILQTMSVKGLKISHVKSHLQMYRN 72
               8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.1531575IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-261672IPR009057Homeodomain-like
SuperFamilySSF466891.2E-131973IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-221972IPR006447Myb domain, plants
PfamPF002491.4E-62071IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MGEKGKKMGV RKYNKSEFPR LRWTPQLHEL FVDSVRILGG KHKATPKRIL QTMSVKGLKI  60
SHVKSHLQMY RNVKNDDEMN MFVRTSQLLL SRNKHDFHEI HNLKHTNRSV FSSLFSPQRS  120
LGNNNELRND WRDFDHTNNN GEIECQSTQN EAIHHQDTTN INIVTTLYIN SSSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024019247.17e-48transcription factor HHO5
TrEMBLA0A2P5EVY77e-51A0A2P5EVY7_TREOI; Octamer-binding transcription factor
STRINGXP_010093180.15e-47(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91862839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.14e-27G2-like family protein