PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK05761.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 262aa    MW: 29685.7 Da    PI: 6.5927
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK05761.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.61.8e-12132157126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                y   +C+++ +tG+C yGd+CkF+H+
  PK05761.1 132 YQPDICKDYKETGYCGYGDSCKFMHD 157
                67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.13E-9128162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878131159IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7131158IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-10132157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-12132162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.6E-12202251IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578506.8E-13209252No hitNo description
PfamPF139201.8E-8209250No hitNo description
PROSITE profilePS5008910.453210248IPR001841Zinc finger, RING-type
CDDcd001622.37E-8210251No hitNo description
SMARTSM001842.0E-4210247IPR001841Zinc finger, RING-type
PROSITE patternPS005180225234IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
XDNKLYFSSG PSKSTTLVES NVAPDTTVFQ FESSKEIQVQ HDSRATATLE TETDFTKDAR  60
AIRERVLKQA EEALKGKNKS GGDDKLYKGV NAYTDFKAGF RREQTVSSEK AGGSHGPLRA  120
SAHIRATTRF DYQPDICKDY KETGYCGYGD SCKFMHDRGD YKSGWQMERE WEDAEKIRKR  180
NLALREAGDG DDIVGDESDE DDENALPFAC FICRQPFVDP VVTKCKHYFC EHCALRHHTK  240
NKKCFVCNTP TLGIFNTAHE IR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M2e-632726198313RING finger protein 113A
5z58_M2e-632726198313RING finger protein 113A
6ff4_t2e-632726198313RING finger protein 113A
6ff7_t2e-632726198313RING finger protein 113A
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022958735.11e-163zinc finger CCCH domain-containing protein 1
RefseqXP_023548600.11e-163zinc finger CCCH domain-containing protein 1
RefseqXP_023548608.11e-163zinc finger CCCH domain-containing protein 1
RefseqXP_023548618.11e-163zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-146C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A1S3CS031e-160A0A1S3CS03_CUCME; zinc finger CCCH domain-containing protein 1
STRINGXP_008466746.11e-161(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-149C3H family protein