PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK05843.2

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

MYB_related

Protein Properties

Length: 256aa MW: 28805.3 Da PI: 5.1007

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK05843.2	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.5	4e-10	10	44	2	37
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtl 37 ++W t E++ll++av+++G+++W++Ia ++ +Rt+ PK05843.2 10 QPWCTLEELLLACAVNRHGTKNWDSIAMELS-NRTE 44 689999*************************.9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-7	7	61	IPR009057	Homeodomain-like
SMART	SM00717	2.6E-6	8	62	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-8	10	44	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.33E-6	10	69	IPR009057	Homeodomain-like
CDD	cd00167	4.11E-6	11	60	No hit	No description
PROSITE profile	PS50090	6.458	11	60	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MAKEHETSVQ PWCTLEELLL ACAVNRHGTK NWDSIAMELS NRTESPWTPD TCKHRFDELK 60 RRFTSRNDDE STSFLLIVDQ LKKIRLEELR REVRRHDVSI VSLELKVKRL EEEREKSLKE 120 ENEDKINLEE NERRLNSPEN NLAVKSNSDS CDRENRSSDE SNSTSRRNGA VKSETEPEPE 180 RINDSDPPRP ESEPGKVVNG DENETMAARG EDNTKQSSDV QSSMSLSKSK RSRKRSGAEA 240 GAGAGSGAAA VSSSGX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024020531.1	2e-73	uncharacterized protein LOC21401380
TrEMBL	W9QD95	6e-71	W9QD95_9ROSA; Uncharacterized protein
STRING	XP_010087384.1	1e-71	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1870	29	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	2e-14	DNA-binding bromodomain-containing protein