PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK05866.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HSF
Protein Properties Length: 508aa    MW: 55490.8 Da    PI: 4.5355
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK05866.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.33.8e-36391302102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++e++sws ++nsfvv+++ efa+++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i+
     PK05866.1  39 FLSKTYDMVDDSATDEIVSWSPTNNSFVVWNPPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKSIN 126
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
     PK05866.1 127 RRKP 130
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3933123IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.67E-3634128IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-6335128IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-3239128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-203962IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434078102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-2090102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MDGATGGGEA PSSAGGGSQP AVPAPAPAPI PNANAPPPFL SKTYDMVDDS ATDEIVSWSP  60
TNNSFVVWNP PEFARDLLPK YFKHSNFSSF VRQLNTYGFR KVDPDRWEFA NEGFLRGQKH  120
LLKSINRRKP AHGHSQQQPQ PSHGQNTVGA CVEVGKFGLE EEIERLKRDK NVLMQELVRL  180
RQQQQSTDNQ LQTMVQRLQG MEQRQQQMMS FLAKAVQSPG FLAQFVQQQN ESSRRISEAN  240
KKRRLRQEVV AESNLSAASD GQIVKYQPPM NESAKAMLRQ MVKVEPSSGM DTFNNSTDCF  300
LISDRSSSSS SSAAVDSRSS SCRVSGVTLR EVLPTSGQTS SVPVSSGVTA PAVSESSPQS  360
LTSEKVTTAQ FPDISMLVGS QNAPSLPISQ GDVVMPELSQ MPEMVPEDNF LSNETGGFLD  420
PESLGLDGSM SINLDDIAPD PDIDALLEST TFWDDLLLQS PMAEELSPEG TTKDIDEVQP  480
KENGWNKTQN MDNLTEKMGL LTSDGKEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-263112818129Heat shock factor protein 1
5d5v_B3e-263112818129Heat shock factor protein 1
5d5v_D3e-263112818129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010096952.10.0heat shock factor protein HSF8
SwissprotQ401521e-180HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A2P5ASY70.0A0A2P5ASY7_TREOI; Heat shock transcription factor
STRINGXP_010096952.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-121heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]