PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK05993.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

C2H2

Protein Properties

Length: 158aa MW: 18273.4 Da PI: 10.3043

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK05993.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00026	21	45	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C C+k ++ ++++ H+++ H PK05993.1 21 FYCDLCNKQYKLAMEFEAHLSSydH 45 78*****************987666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.67E-6	19	51	No hit	No description
Pfam	PF12171	6.5E-6	21	48	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	23	45	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
XVLAEREQKI QTEVKEIRKV FYCDLCNKQY KLAMEFEAHL SSYDHNHRKR FKEMREMLGT 60 SSRDDRLKRE QQRQEREMAK FAQMAEADAR KQQQQLQQQQ EESRVAAVAS ELKNASVVAD 120 QDQRKTLKFG FSSKGGTSKM SFGSVARKPK SAVASVFG

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KU947514	1e-77	KU947514.1 Toxicodendron vernicifluum microsatellite c15902 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022159589.1	1e-83	G patch domain-containing protein 8
TrEMBL	A0A2P5DRA0	2e-84	A0A2P5DRA0_TREOI; G patch domain-containing protein
STRING	XP_004163770.1	2e-77	(Cucumis sativus)
STRING	XP_008388422.1	3e-77	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5977	24	28