PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK06068.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

HB-other

Protein Properties

Length: 1746aa MW: 196658 Da PI: 5.1829

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK06068.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.3	2.6e-18	21	77	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + kR t++qle+Le+ ++ + yps++ r+eL+ klgL++rq ++WF+ rR k+kk PK06068.1 21 KTKRKMKTASQLEILEKTYAAEAYPSESLRAELSVKLGLSDRQLQMWFCHRRLKDKK 77 6799***************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.9E-18	6	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.74E-15	15	77	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.552	18	78	IPR001356	Homeobox domain
SMART	SM00389	1.1E-16	20	82	IPR001356	Homeobox domain
CDD	cd00086	6.89E-13	21	77	No hit	No description
Pfam	PF00046	6.5E-16	21	77	IPR001356	Homeobox domain
PROSITE profile	PS50827	17.083	511	570	IPR018501	DDT domain
SMART	SM00571	2.1E-22	511	570	IPR018501	DDT domain
Pfam	PF02791	2.2E-17	513	567	IPR018501	DDT domain
Pfam	PF05066	2.4E-15	693	761	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.5E-8	908	946	IPR028942	WHIM1 domain
Pfam	PF15613	3.5E-12	1091	1162	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1746 aa Download sequence Send to blast
MEVSGSEAGE KKKPPEGGEN KTKRKMKTAS QLEILEKTYA AEAYPSESLR AELSVKLGLS 60 DRQLQMWFCH RRLKDKKATP AKRLRGQESS PARRAGEDEV AVGGLGNEHA PGSGSRHGHV 120 AEPRRGAPRH WAGGSRPGGS EMQVMAKRYY ESQQTIAELR AIAFVEAQLG EPLREDGPIL 180 GMDFDTLPPD AFGAPIATVG QHKQSRRSYD AKVYERSDAK PIKGTGRAVL EYQFIPEKPT 240 VKTEAYDKLT HSYHYGSSAE GPTAKTPLLS AGHPYTPGNE HLSSGYGFQD AYFGTHPISQ 300 LENPYTASER RLTIEEDALR NERRRKSEEA RVAREVEAQE KRIRKELEKQ DILRRKREEQ 360 LRKDLERQDR ERRKEEERLL REKQREEERF QREQRRELER REKFLQKESM RAEKMKQREE 420 LRREREAARL KAANERAIAR KIAKESMELI DDERLELMEL AASSKGLPSI VSLDYETLQN 480 LELYKDMRIA FPPKSVHLKK PFAVQPWTDS EDNIGNLLMV WRFLITFADV LGLWPFTLDE 540 FVQAFHDYDP RLLGEIHVSL LKSIIKDIED VVRTPSTGLG ANQTTAANPV GGHPLIVEGA 600 YAWGFDIRSW QNHLNPLTWP EILRQFALSA GFGPQLKKRN VEPSYLRDNY EANDGADIVS 660 NLRSGAAVEN AFAKMQERGF SNPRGSRHRL TPGTVKFAAF HVLSLEGDKG LTILEVADRI 720 QKSGLRDLTT SKTPEASIAA ALSRDTKLFE RTAPSTYCVR AAYRKDPADA ETVLSSARER 780 IGVFKNGFLD VEDADEGERD EDSESDVGED PEIDDLGTEI NPEKGSVVSQ EVNKLNEASI 840 SRNGEEIVQI IETKKKDLRN SRGDSVHSES YVKREDAVSF LAQPINVNKS DVPNFGCEDP 900 DIDESNPGEP WVQGLMEGEY SDLSVEERLN ALVALLGVAI EGNSIRLVLE ERLEAANALK 960 KQMWAEMQLD KRRMKEDYVL RMPYTSFINN KFELNPVISS AEAKQSPFVN VDDKNNGTTG 1020 DLAVKEERME DPSNNNPCVN NFPSGGNLQM QEVCAGPDNN LSQQPGYAVD RSRSQLKSYI 1080 GYKAEEMYVY RSLPLGQDRT RNRYWQFITS ASQNDPGCSR IFVELNDGRW RLIDSEEGFD 1140 ALLASLDIRG VRESQLHAML VRIELFFKKA VRKKMLHANM GRQREDTGKT AVPIDCSNGI 1200 DSPSSTLCLA ESDLSESSTS FVIELGRNKI EKSGAFQRYQ DLERWIWKEC LSSSMLYAIK 1260 HGKKRSKQLL NVCDSCHGIY SSEDNHCPSC HRTFSSSESG TTSFSEHITR CEDKLTLNQY 1320 GTLNDSPSFP LRIRLLKVVL ALIEVSVPPE ALQSLWTDSH RKSWGAKLNA SSSAEDLLQV 1380 LTLLESAIKR ENLFSEFETT NELLDSLNPR RYIAPHSTCL ETMTVLPWVP LTTAAVALRI 1440 MEFDAAIFYV PQQKLDSQKD RGSGNVIKLS SKYALMKNSF DDGITRTPCQ VDNLKKDSWV 1500 DLGEGLQNSG FKKGSRGNGR ARGGSNVTTS TRGGQSQKRA IGSRGETVKK NVRALGRGLR 1560 WKGSQRGGCK RGRRTVRTKQ KPAKRMFGTG VEEETFPKEI IDEKFPRSVV QDWNTEDATG 1620 LQMEDAEPAS SISGRSEYDE ENGQGSGDEF DEMAMEDEDY NTGFNDRSGE LDGSDYNVDE 1680 VDDDDDDNDE DDDQDEYNVR QVEQRDFDVD RYINGDSDEE ENRGGGQDME IDQQTGSTSS 1740 DYSESD

Sequence ? help Back to Top

Protein Sequence Length: 1746 aa Download sequence Send to blast

MEVSGSEAGE KKKPPEGGEN KTKRKMKTAS QLEILEKTYA AEAYPSESLR AELSVKLGLS  60
DRQLQMWFCH RRLKDKKATP AKRLRGQESS PARRAGEDEV AVGGLGNEHA PGSGSRHGHV  120
AEPRRGAPRH WAGGSRPGGS EMQVMAKRYY ESQQTIAELR AIAFVEAQLG EPLREDGPIL  180
GMDFDTLPPD AFGAPIATVG QHKQSRRSYD AKVYERSDAK PIKGTGRAVL EYQFIPEKPT  240
VKTEAYDKLT HSYHYGSSAE GPTAKTPLLS AGHPYTPGNE HLSSGYGFQD AYFGTHPISQ  300
LENPYTASER RLTIEEDALR NERRRKSEEA RVAREVEAQE KRIRKELEKQ DILRRKREEQ  360
LRKDLERQDR ERRKEEERLL REKQREEERF QREQRRELER REKFLQKESM RAEKMKQREE  420
LRREREAARL KAANERAIAR KIAKESMELI DDERLELMEL AASSKGLPSI VSLDYETLQN  480
LELYKDMRIA FPPKSVHLKK PFAVQPWTDS EDNIGNLLMV WRFLITFADV LGLWPFTLDE  540
FVQAFHDYDP RLLGEIHVSL LKSIIKDIED VVRTPSTGLG ANQTTAANPV GGHPLIVEGA  600
YAWGFDIRSW QNHLNPLTWP EILRQFALSA GFGPQLKKRN VEPSYLRDNY EANDGADIVS  660
NLRSGAAVEN AFAKMQERGF SNPRGSRHRL TPGTVKFAAF HVLSLEGDKG LTILEVADRI  720
QKSGLRDLTT SKTPEASIAA ALSRDTKLFE RTAPSTYCVR AAYRKDPADA ETVLSSARER  780
IGVFKNGFLD VEDADEGERD EDSESDVGED PEIDDLGTEI NPEKGSVVSQ EVNKLNEASI  840
SRNGEEIVQI IETKKKDLRN SRGDSVHSES YVKREDAVSF LAQPINVNKS DVPNFGCEDP  900
DIDESNPGEP WVQGLMEGEY SDLSVEERLN ALVALLGVAI EGNSIRLVLE ERLEAANALK  960
KQMWAEMQLD KRRMKEDYVL RMPYTSFINN KFELNPVISS AEAKQSPFVN VDDKNNGTTG  1020
DLAVKEERME DPSNNNPCVN NFPSGGNLQM QEVCAGPDNN LSQQPGYAVD RSRSQLKSYI  1080
GYKAEEMYVY RSLPLGQDRT RNRYWQFITS ASQNDPGCSR IFVELNDGRW RLIDSEEGFD  1140
ALLASLDIRG VRESQLHAML VRIELFFKKA VRKKMLHANM GRQREDTGKT AVPIDCSNGI  1200
DSPSSTLCLA ESDLSESSTS FVIELGRNKI EKSGAFQRYQ DLERWIWKEC LSSSMLYAIK  1260
HGKKRSKQLL NVCDSCHGIY SSEDNHCPSC HRTFSSSESG TTSFSEHITR CEDKLTLNQY  1320
GTLNDSPSFP LRIRLLKVVL ALIEVSVPPE ALQSLWTDSH RKSWGAKLNA SSSAEDLLQV  1380
LTLLESAIKR ENLFSEFETT NELLDSLNPR RYIAPHSTCL ETMTVLPWVP LTTAAVALRI  1440
MEFDAAIFYV PQQKLDSQKD RGSGNVIKLS SKYALMKNSF DDGITRTPCQ VDNLKKDSWV  1500
DLGEGLQNSG FKKGSRGNGR ARGGSNVTTS TRGGQSQKRA IGSRGETVKK NVRALGRGLR  1560
WKGSQRGGCK RGRRTVRTKQ KPAKRMFGTG VEEETFPKEI IDEKFPRSVV QDWNTEDATG  1620
LQMEDAEPAS SISGRSEYDE ENGQGSGDEF DEMAMEDEDY NTGFNDRSGE LDGSDYNVDE  1680
VDDDDDDNDE DDDQDEYNVR QVEQRDFDVD RYINGDSDEE ENRGGGQDME IDQQTGSTSS  1740
DYSESD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	11	24	KKPPEGGENKTKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024019794.1	0.0	homeobox-DDT domain protein RLT2
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A2P5FJ82	0.0	A0A2P5FJ82_TREOI; Octamer-binding transcription factor
STRING	XP_010093958.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator