PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK06103.2

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

MYB_related

Protein Properties

Length: 195aa MW: 21926.7 Da PI: 9.982

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK06103.2	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.3	4e-09	25	53	1	29
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 +++WT+eE+ l+ +v ++G g W+tI PK06103.2 25 KQKWTAEEEAALKAGVIKHGAGKWRTILT 53 79*************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.09E-9	22	70	IPR009057	Homeodomain-like
Pfam	PF00249	7.1E-6	25	52	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-8	25	70	IPR009057	Homeodomain-like
CDD	cd11660	1.09E-12	26	70	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
DSGSAEFDCP RTRRLFXLLL MGAPKQKWTA EEEAALKAGV IKHGAGKWRT ILTDPEFSSI 60 LHLRSNVDLK VSICKFLAVT VSKFQKSSVW MDDFMFLGPL TLFQLYYAFC IFQDHILFGS 120 DXDKWRNINV TAIWGSRQKA KLALKKNLPT PKLDNNPLAL VTVVQNVEEV VDAKPLAIAS 180 GTMRNTNSKE PNARX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010102753.1	1e-59	telomere repeat-binding factor 2
Refseq	XP_021805529.1	2e-59	telomere repeat-binding factor 2
Refseq	XP_021805530.1	2e-59	telomere repeat-binding factor 2
Refseq	XP_021805531.1	2e-59	telomere repeat-binding factor 2
Refseq	XP_021805532.1	2e-59	telomere repeat-binding factor 2
Refseq	XP_024025472.1	1e-59	telomere repeat-binding factor 2
TrEMBL	A0A2P5D0H9	2e-60	A0A2P5D0H9_PARAD; Telomeric repeat-binding factor
STRING	XP_008237807.1	9e-59	(Prunus mume)
STRING	EMJ06834	9e-59	(Prunus persica)
STRING	XP_010102753.1	5e-59	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1453	33	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67580.2	2e-32	MYB_related family protein