PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK06287.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NAC

Protein Properties

Length: 290aa MW: 33413.1 Da PI: 8.53

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK06287.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.6	4.8e-53	8	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..... 95 lppGfrFhPtdeel+ +yL+k++++++l++ ++i+evdiyk++Pw+Lp k+ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++s+ PK06287.1 8 LPPGFRFHPTDEELILHYLRKRINSTPLPV-SIIAEVDIYKFDPWQLPDKALFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIISSslcss 106 79**************************.89***********8777899***********************************989888 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++g+kk Lvfykgr pkg+kt+W+mheyrl PK06287.1 107 ssYHQNIGVKKALVFYKGRPPKGVKTNWIMHEYRL 141 776677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-64	5	177	IPR003441	NAC domain
PROSITE profile	PS51005	60.935	8	177	IPR003441	NAC domain
Pfam	PF02365	1.7E-27	9	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MKNPQSNLPP GFRFHPTDEE LILHYLRKRI NSTPLPVSII AEVDIYKFDP WQLPDKALFG 60 EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKTIIS SSLCSSSSYH QNIGVKKALV 120 FYKGRPPKGV KTNWIMHEYR LAESPTYAYN SKLNNINKVK DSSMRLDDWV LCRIYKKTNV 180 VQQQHHQTTT TMASDYLNHH HQEEEEEQQQ QFIQEALLSS SSPSCLKGDQ EKYYSIIKPQ 240 KSSSFSNLLD YSILSSLLSD CPNNNNSSSI GFVVNDDYDN NHYNNSMISX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-74	5	183	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-74	5	183	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-74	5	183	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-74	5	183	14	171	NO APICAL MERISTEM PROTEIN
4dul_A	6e-74	5	183	14	171	NAC domain-containing protein 19
4dul_B	6e-74	5	183	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00333	DAP	Transfer from AT3G04070	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010088481.1	1e-127	NAC transcription factor 47
Swissprot	Q84TD6	1e-100	NAC47_ARATH; NAC transcription factor 47
TrEMBL	A0A2P5AK11	1e-127	A0A2P5AK11_PARAD; NAC domain containing protein
STRING	XP_010088481.1	1e-126	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6621	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	2e-91	NAC domain containing protein 47

Publications ? help Back to Top
Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]