PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK06316.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HB-other
Protein Properties Length: 92aa    MW: 10593.6 Da    PI: 9.1957
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK06316.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.66.6e-1133652254
               SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54
               ++yp+ +++  LA+++gLt +qV++WF N R +
  PK06316.2 33 HPYPTDTDKHMLANQTGLTRNQVSNWFINARVR 65
               89*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.693669IPR001356Homeobox domain
SMARTSM003891.0E-6873IPR001356Homeobox domain
CDDcd000867.01E-111170No hitNo description
Gene3DG3DSA:1.10.10.603.0E-291273IPR009057Homeodomain-like
SuperFamilySSF466891.92E-181476IPR009057Homeodomain-like
PfamPF059202.5E-192665IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
NNNNNNQFGG PKEALPERSV AVLRAWLFDH FLHPYPTDTD KHMLANQTGL TRNQVSNWFI  60
NARVRVWKPM VEEIHTLETK GTLTNNTTTN TX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A8e-181573563Homeobox protein Meis2
3k2a_B8e-181573563Homeobox protein Meis2
4xrm_A1e-171573563Homeobox protein Meis2
4xrm_B1e-171573563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for specifying floral primordia and establishing early internode patterning events during inflorescence development. {ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:16741748}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020597436.11e-41BEL1-like homeodomain protein 9
RefseqXP_023749449.11e-41BEL1-like homeodomain protein 8
SwissprotQ9SJJ33e-40BLH8_ARATH; BEL1-like homeodomain protein 8
TrEMBLA0A1R3J9R65e-41A0A1R3J9R6_9ROSI; Uncharacterized protein
TrEMBLA0A2J6JGE34e-40A0A2J6JGE3_LACSA; Uncharacterized protein
STRINGXP_008355186.13e-40(Malus domestica)
STRINGMigut.D02248.1.p5e-40(Erythranthe guttata)
STRINGGSMUA_Achr11P07620_0011e-40(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34813257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.11e-37BEL1-like homeodomain 8
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]