PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK06605.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family Trihelix
Protein Properties Length: 261aa    MW: 29798.7 Da    PI: 4.4616
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK06605.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix60.63.9e-1923110286
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                Wt+ e+ +Li+a++e++ +l+rg lk  +Weev+  +        +  +++++qC++k+e+l++ry+ +k++ +      +s +pyfd ++
  PK06605.1  23 WTHPETVHLIQAYEEKWYSLKRGPLKSSQWEEVAVTVaarcgyDYTEPSKTAIQCRHKMEKLRQRYRSEKNRVNLV---GVSVWPYFDLMD 110
                ***********************************998666665566689***********************995...5668*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.0512285IPR017877Myb-like domain
PfamPF138371.2E-1922112No hitNo description
SMARTSM005957.1E-830117IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MATATTTTPP PPTPGKKPQP IPWTHPETVH LIQAYEEKWY SLKRGPLKSS QWEEVAVTVA  60
ARCGYDYTEP SKTAIQCRHK MEKLRQRYRS EKNRVNLVGV SVWPYFDLMD RLERGPLPIS  120
AQPMIAIPYR RDRDLDDEDE DDDDDEESVI RTKSRSIDYI LKRPAIVNRF AGDGERERGS  180
VNGFSRVWGE PVTKRPREPV VEEEDDDDDS DGDEAEGRDF GTAAEEERGG TEIGGGDKGI  240
FGKNCWDGEY ENGDDERYRE V
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015892407.11e-73trihelix transcription factor ASIL1
TrEMBLA0A2P5CIE19e-82A0A2P5CIE1_TREOI; Myb-like domain containing protein
STRINGVIT_07s0005g06670.t014e-66(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100872835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.12e-39Trihelix family protein