PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK07031.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Dof

Protein Properties

Length: 321aa MW: 35167.1 Da PI: 7.7342

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK07031.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.6e-39	49	109	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknkk s PK07031.1 49 PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNKKPS 109 6899******************************************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-27	48	107	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-33	51	107	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.096	53	107	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	55	91	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MDTTAQWQHE ESGFVGMGEL MGSNMNNNNN NKNSNIDNGS SGDQKRSRPQ EQLNCPRCNS 60 TNTKFCYYNN YSLTQPRYFC KTCRRYWTEG GTLRNVPVGG GSRKNKKPST TNTTNTTTTS 120 NNINNDHMMM INTATINLTP QNLMLSSSYN NSNNNNHHDQ AGTGQDLNLG FQSNKVHPPP 180 PSSSSLGVNG SSTRQLLMYP SGFPFQDHEF KSSNNLGFCG SSSNNVLDHH GLGLGNRYST 240 TTTTGHSYNG MVQDHDQNHE NNGGTILFPF GDLKQTVSSN GTTAADEVNI IHDHHHHHHH 300 QIKGQGNPTG YWTGLLGGGG G

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2P5BYV2	2e-73	A0A2P5BYV2_PARAD; Zinc finger transcription factor

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.3	1e-39	Dof family protein