PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK07165.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family FAR1
Protein Properties Length: 649aa    MW: 75563.1 Da    PI: 7.6919
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK07165.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1514.7e-1649135191
       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                ++Y++++++ GF v+k++s+ s ++g+ +   + Cs+ gk+ ++k++     ++++ tr++Cka+++ +  +dgk +v+++ leHnHel+p
  PK07165.1  49 EYYRQFGRQEGFGVKKKTSRAS-MDGRSKFVCLSCSRAGKSISHKQN---YLTPNPLTRIECKARINATILEDGKCKVNSVALEHNHELSP 135
                69****************9999.888788999999999999888877...899************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.2E-1349135IPR004330FAR1 DNA binding domain
PfamPF105514.1E-36253347IPR018289MULE transposase domain
PROSITE profilePS5096611.066536572IPR007527Zinc finger, SWIM-type
PfamPF044341.9E-8539570IPR007527Zinc finger, SWIM-type
SMARTSM005755.0E-4547574IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MKEVVSSFKD VNSKEALDEN EMDKRFGLYE IVKPPETGMT FDSADSLYEY YRQFGRQEGF  60
GVKKKTSRAS MDGRSKFVCL SCSRAGKSIS HKQNYLTPNP LTRIECKARI NATILEDGKC  120
KVNSVALEHN HELSPSKSQF YLCNREKVIG VRRKLAPSDQ TSNGVINNYQ SVDTGAFDNV  180
TMLENDCTSY FEKGSRLQLF AGDAKAIQEY FVRMQIKNSN FFYMMDMDDD ARIKNIFWAD  240
ARSRALYEEF GDVVTFDTTY LTNKYDMPLA PFTGVNHHGQ PILFGCALLS DENTATFTWL  300
FKTWLACMSG RAPNVIITDE HNSMTKAIDA VFPNTRHRWC LWQVMKKLLV KLEGHKLYDQ  360
VKMSLQDAIY DSFTKKEFEE SWERIVKDLN LCDNLWLSSL YNERNRWVPA FLKDSFWAGM  420
STTQRDENSV PFFDGRVNSK TTIKQFVEQY DKALRNKVEK EHLADFQCFS TWIPCVTLFE  480
IEKQFQVAYT NTKFKEFQKE LTGKLYCEVS CIDSKDGNFD VSEVMFVGDK RKQVHFNVQF  540
NTENCEAHCS CGLFQFRGIL CKHAISVLLK MEVINVPEKY ILQRWRKDLK RCHTRVKVGY  600
YDDWTSNLEA QRYDKLRKKF DEVADLAVVS DEKMMQLWNL LDEIQTKVK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028868.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A251PQZ50.0A0A251PQZ5_PRUPE; Uncharacterized protein
TrEMBLM5WNR60.0M5WNR6_PRUPE; Uncharacterized protein
STRINGEMJ154170.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-119FAR1 family protein