PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK07181.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

C3H

Protein Properties

Length: 220aa MW: 24109.5 Da PI: 6.1366

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK07181.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27	7.8e-09	193	213	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ++ar G+Ck G +C+F Hg PK07181.1 193 PCLYYAR-GYCKNGTSCRFLHG 213 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.723	188	215	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.0E-4	190	214	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.59E-6	191	213	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.6E-6	192	214	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.9E-6	193	213	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MDSYEATRVV FTRIQNIDPE NASKIMGLLL IQDHGEKEMI RLAFGPETLL HSVILKARKD 60 LAITSSSSSS SPPLTPSTTV NGSVNLSLTI PNSNPTSWVD ELTISPQKNS SSTSLNSSSL 120 PFYANNNDNN IIIDDFHLQN PDLFYQDYLS SSSPTDHHQA VWSNSSVNHR RSCSVSDVCL 180 NTEDPNSGFG WKPCLYYARG YCKNGTSCRF LHGVGVGVGX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003533499.1	3e-70	zinc finger CCCH domain-containing protein 53 isoform X2
Refseq	XP_006587690.1	3e-70	zinc finger CCCH domain-containing protein 53 isoform X1
Refseq	XP_024186989.1	3e-70	zinc finger CCCH domain-containing protein 53 isoform X2
Refseq	XP_024186998.1	3e-70	zinc finger CCCH domain-containing protein 53 isoform X3
Refseq	XP_028247540.1	3e-70	zinc finger CCCH domain-containing protein 53-like isoform X1
Refseq	XP_028247541.1	3e-70	zinc finger CCCH domain-containing protein 53-like isoform X2
Swissprot	Q10LZ9	4e-49	C3H23_ORYSJ; Zinc finger CCCH domain-containing protein 23
TrEMBL	A0A2P5AN77	4e-73	A0A2P5AN77_TREOI; Splicing factor-like protein
STRING	GLYMA09G35990.3	1e-69	(Glycine max)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]