PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK07396.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 255aa    MW: 28882.3 Da    PI: 5.5782
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK07396.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-05211230120
                EEETTTTEEESSHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                ++Cp C k+F+r  n++ H+
  PK07396.1 211 FSCPVCYKTFNRYNNMQMHM 230
                89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.58E-5207233No hitNo description
PROSITE profilePS501579.743211238IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-6211230IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280213233IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
NNNNNNNNLY KLNPFLTHHN NIPPNYHYPF HNHNYHQQET QNFYFLGSQT VSTSSTSAPS  60
SPPIREALPL LSLTPTNYED YQNDVVVDDD NNNIIIDQDD NNIDEEDDEN DHDMDHMMIK  120
TSNTTSTSNN STVTVALHIG LPNPSAAEME ALLSGSAPSS SSQLITNNNN NNLNHNHNHN  180
HDYSTSTTNT LYKGQYWIPT PSQILIGPTQ FSCPVCYKTF NRYNNMQMHM WGHGSQYRKG  240
PESLRGTQPT GMLRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0988937e-56BT098893.1 Soybean clone JCVI-FLGm-23O4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521192.12e-63zinc finger protein WIP2
RefseqXP_028225335.12e-63zinc finger protein WIP2-like
SwissprotQ9SVY18e-51ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0R0KIS45e-62A0A0R0KIS4_SOYBN; Uncharacterized protein
TrEMBLA0A445LBY55e-62A0A445LBY5_GLYSO; Zinc finger protein WIP2
STRINGGLYMA03G29610.28e-62(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.12e-42C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]