PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK07402.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 397aa    MW: 43828 Da    PI: 4.9005
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK07402.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11e-1869119155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta eAa a+++a+++++g
  PK07402.1  69 CNYRGVRQRT-WGKWVAEIREP---N-RgNRLWLGTFPTALEAALAYDEAARAMYG 119
                56*****999.**********8...2.359***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-1369119IPR001471AP2/ERF domain
CDDcd000181.02E-3069128No hitNo description
Gene3DG3DSA:3.30.730.102.0E-3070128IPR001471AP2/ERF domain
PROSITE profilePS5103221.39170127IPR001471AP2/ERF domain
SMARTSM003804.5E-3570133IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-2070127IPR016177DNA-binding domain
PRINTSPR003672.5E-97182IPR001471AP2/ERF domain
PRINTSPR003672.5E-993109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MSSEKIQRKR KTRSRREGNS VADTLAKWKE YNSSIESTYD DGKPTRRIPA KGSKKGCMKG  60
KGGPDNSRCN YRGVRQRTWG KWVAEIREPN RGNRLWLGTF PTALEAALAY DEAARAMYGP  120
CARLNLPNIT DYKSCKTSSK VSSSLATPSG SSSVTTPAGS ESTTTSNSIL SEVCADEESK  180
VKGIASGGKN EVIQSRVNPQ PLLVAEVATP LSAVKSEVKL EEASPKPVKQ EAKEDTMEAE  240
YQTWDKLGDT EENLLQSFSM DEMFDVEELL GIMDGNAGSV EDICCNALQW DNEDIQTNEP  300
SNLSYQLENP DAKLLGSLRH MEHPSSGLDY SFDFLKPGRI EDNNICLDDQ AYTWDYPITS  360
FEMEGMLAEG GMVHPQDGLC DIRLAITGHK KARTMSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-1770127260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1611QRKRKT
2916RKTRSRRE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010087025.21e-143dehydration-responsive element-binding protein 2C isoform X2
TrEMBLA0A2P5E0P01e-162A0A2P5E0P0_PARAD; AP2/ERF transcription factor
STRINGXP_010087025.11e-132(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.16e-50ERF family protein