PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK07450.2

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

HRT-like

Protein Properties

Length: 250aa MW: 28043 Da PI: 10.3706

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK07450.2	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	54.3	2.2e-17	120	150	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv l++ s+C+r+Pv+gRKRC+ HKGmR+ PK07450.2 120 ICGVVLGHDSICRRPPVEGRKRCADHKGMRV 150 8*****************************7 PP
2	HRT-like	56.7	4.1e-18	199	228	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CG+il dGs+Ck qP+kg+KRC eHKG+Ri PK07450.2 199 CGFILADGSPCKSQPIKGNKRCIEHKGRRI 228 *****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MPSKSDAIRI ETQLLNTFDY AWNTSINGSR RPNDILQKLK KISSSTTHFY DSVLKLVPFS 60 QKQVGIRIEA RKSPSTEGKF NPRVDEESHN FLSRVFKFGR SQPKLVLDRS TIPPDDRTTI 120 CGVVLGHDSI CRRPPVEGRK RCADHKGMRV KGTVKVEISN GNVYPQFDRA APYSSNEDSK 180 GVSQVTVNYL TSETFTPACG FILADGSPCK SQPIKGNKRC IEHKGRRIRK PNSVLVQNEK 240 IDHILQSVVS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024017156.1	1e-108	protein EFFECTOR OF TRANSCRIPTION 2 isoform X1
TrEMBL	W9R5X1	1e-106	W9R5X1_9ROSA; Uncharacterized protein
STRING	XP_010090025.1	1e-107	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9409	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	2e-35	effector of transcription2