PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK07740.3
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 307aa    MW: 32419.4 Da    PI: 9.3578
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK07740.3genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.1e-064063225
               -S---SGGGGTS--TTTTT-SS-S CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
               k ++C  f+ t  C++G++C+F H
  PK07740.3 40 KSKPCTKFFSTSGCPFGENCHFLH 63
               7789******************** PP
2zf-CCCH26.79.6e-09107132227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                kt+lC+ f+ +  Ck+G++C+FaHg+
  PK07740.3 107 KTRLCNKFSSGEGCKFGEKCHFAHGE 132
                8*********66************96 PP
3zf-CCCH33.47.5e-11273297126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                ++t++C++f + G C +GdrC+FaHg
  PK07740.3 273 FRTKICDNFNK-GSCTFGDRCHFAHG 297
                589********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.213865IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.843866IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-63964IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-84063IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-54063IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-14103137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-8103136IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4105132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22105133IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-6107132IPR000571Zinc finger, CCCH-type
SMARTSM003221.0E-9170240IPR004087K Homology domain
PROSITE profilePS5008413.9171235IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.1E-14172239IPR004088K Homology domain, type 1
CDDcd001053.53E-13173236No hitNo description
SuperFamilySSF547912.05E-14173265IPR004088K Homology domain, type 1
PfamPF000133.9E-11173236IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.8E-15270303IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-7272298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23272299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-8272302IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-8273297IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEYEGGRKRA RFDTSFHGNG GGFKKSKPEM ETFTPGIGSK SKPCTKFFST SGCPFGENCH  60
FLHYVPGGLK VVSQLINAGG SPALPPPNRN PVVPPSYPDG ASPPAVKTRL CNKFSSGEGC  120
KFGEKCHFAH GEWELGKPTL PSYDDHRGGR MGGRMEPPPS SHGPAASFGL SSTAKISVDS  180
SLAGAIIGKN GVNSKQICRA TGAKLAIREH ETDPHLRNIE LEGTFDQIKQ ASTMVHELIV  240
NVGSSMAANH MKNHHGGGGG GSGGHSGGMG SNFRTKICDN FNKGSCTFGD RCHFAHGAHE  300
LRKSSGI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875946.11e-156zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-107C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLW9QK761e-151W9QK76_9ROSA; Zinc finger CCCH domain-containing protein 14
STRINGXP_010087387.11e-152(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-78C3H family protein