PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK07740.4
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 168aa    MW: 17927 Da    PI: 9.312
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK07740.4genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.25e-074063225
               -S---SGGGGTS--TTTTT-SS-S CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
               k ++C  f+ t  C++G++C+F H
  PK07740.4 40 KSKPCTKFFSTSGCPFGENCHFLH 63
               7789******************** PP
2zf-CCCH27.94.1e-09107132227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                kt+lC+ f+ +  Ck+G++C+FaHg+
  PK07740.4 107 KTRLCNKFSSGEGCKFGEKCHFAHGE 132
                8*********66************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.843866IPR000571Zinc finger, CCCH-type
SMARTSM003560.213865IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-63964IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-84063IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-54063IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-14103137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-8103136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22105133IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4105132IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-7107132IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MEYEGGRKRA RFDTSFHGNG GGFKKSKPEM ETFTPGIGSK SKPCTKFFST SGCPFGENCH  60
FLHYVPGGLK VVSQLINAGG SPALPPPNRN PVVPPSYPDG ASPPAVKTRL CNKFSSGEGC  120
KFGEKCHFAH GEWELGKPTL PSYDDHRGGR MGGRMEPPPS SHGPAASX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875946.15e-83zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R02e-47C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLF6GUE54e-78F6GUE5_VITVI; Uncharacterized protein
STRINGVIT_06s0004g01290.t017e-79(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-32C3H family protein