PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK07740.5
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 138aa    MW: 14963.7 Da    PI: 8.2349
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK07740.5genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33e-0977102227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                kt+lC+ f+ +  Ck+G++C+FaHg+
  PK07740.5  77 KTRLCNKFSSGEGCKFGEKCHFAHGE 102
                8*********66************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.27E-873106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-1573107IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-475102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2275103IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-777102IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
HCYLFATFEL THLINTSMQY FRVPFGENCH FLHYVPGGLK VVSQLINAGG SPALPPPNRN  60
PVVPPSYPDG ASPPAVKTRL CNKFSSGEGC KFGEKCHFAH GEWELGKPTL PSYDDHRGGR  120
MGGRMEPPPS SHGPAASX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875946.14e-56zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R04e-29C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2P5BJ512e-54A0A2P5BJ51_PARAD; Polyribonucleotide nucleotidyltransferase
STRINGXP_004497409.12e-53(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.15e-09C3H family protein