PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK07805.2

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

FAR1

Protein Properties

Length: 99aa MW: 11505.9 Da PI: 9.0987

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK07805.2	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.1	3.3e-19	16	84	2	74
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdg 74 fY+eYAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk+++d+ PK07805.2 16 FYKEYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRKQDD 84 **************************************999877....9****************9854 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-17	16	84	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 99 aa Download sequence Send to blast
PHDGIEFESH EDAYTFYKEY AKSVGFGTAK LSSRRSRASK EFIDAKFSCI RYGNKQQSDD 60 AINPRPSPKI GCKASMHVKR KQDDESLYTF VWLMQTWFI

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028778755.1	3e-47	protein FAR1-RELATED SEQUENCE 4
Swissprot	Q6NQJ7	4e-43	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A061GTS8	4e-45	A0A061GTS8_THECC; Far1-related sequence 4 isoform 1
TrEMBL	A0A1R3I689	6e-46	A0A1R3I689_9ROSI; Uncharacterized protein
TrEMBL	A0A2H5NMJ7	2e-45	A0A2H5NMJ7_CITUN; Uncharacterized protein
STRING	EOY32573	6e-46	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.2	5e-41	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]