PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK07880.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

WOX

Protein Properties

Length: 292aa MW: 32938.3 Da PI: 6.4375

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK07880.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.2	1.9e-20	97	157	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql+ Le+ F + n +p++++++e+++ l +++e++V++WFqNrRa+ k+ PK07880.1 97 RQRWTPTPVQLQNLERIFDQgNGTPTKQKIKEITSDLsqygQISETNVYNWFQNRRARSKR 157 89***************99************************************97 PP
2	Wus_type_Homeobox	97.2	1.3e-31	96	159	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++ Le+++++G tP+k++i++it+ L++yG+i+++NV++WFQNr+aR+++kq PK07880.1 96 ARQRWTPTPVQLQNLERIFDQGNGTPTKQKIKEITSDLSQYGQISETNVYNWFQNRRARSKRKQ 159 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-16	91	162	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.9	93	158	IPR001356	Homeobox domain
SMART	SM00389	1.5E-12	95	162	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.71E-17	96	164	IPR009057	Homeodomain-like
Pfam	PF00046	3.1E-18	97	157	IPR001356	Homeobox domain
CDD	cd00086	3.57E-12	97	159	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MEEKDDLNVN HVNMSSSSVV NGGVIGGGTP AIPYVKVMTD AQLQTLRKQI AAYATICEQL 60 VQMHKNHTSQ LDLSGVRLGN VYCDQLMTSS GHKITARQRW TPTPVQLQNL ERIFDQGNGT 120 PTKQKIKEIT SDLSQYGQIS ETNVYNWFQN RRARSKRKQQ NAAAPNNNNN NNNNNNNAES 180 EFETDIESPK DKKTKPEEFH SQHNHLIPRA NDDINFHNSE LGSDLHFFDP QSSKGDTIFT 240 SSTDLRPPRD LSPLPFYDGL LSNSRNEHLN GKMEMPGSYS LYEHAEDFNM TG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	158	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023893569.1	1e-132	WUSCHEL-related homeobox 13
Swissprot	Q5QMM3	2e-81	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A248SLF2	1e-129	A0A248SLF2_BROPA; WUSCHEL-related homeobox 9
STRING	XP_008241933.1	1e-121	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-80	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]