PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK07906.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WOX
Protein Properties Length: 216aa    MW: 25506.2 Da    PI: 9.0337
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK07906.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox70.61.8e-2268127357
                --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                +R+++t+eql++Leel+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  PK07906.1  68 SRWNPTPEQLRALEELYRRgTRTPSAEQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 127
                7*****************99**************************************97 PP
2Wus_type_Homeobox116.41.4e-3767129365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
          PK07906.1  67 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 129
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.6E-565132IPR001356Homeobox domain
PfamPF000463.7E-2068127IPR001356Homeobox domain
SuperFamilySSF466899.41E-1368133IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-968127IPR009057Homeodomain-like
CDDcd000864.02E-569129No hitNo description
PROSITE profilePS5007111.22473128IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
XQQQQQQQQQ PTNPNNNINN NFQTTQQYHQ LVSNTNTNTS TDYHHHQNMM MMMSKKELNI  60
GQQVVVSSRW NPTPEQLRAL EELYRRGTRT PSAEQIQHIT AQLRRYGKIE GKNVFYWFQN  120
HKARERQKRR RQIMESSSSS SLSPDNDNQN HQEEMTLLEG SNNNNKTKNW VPTSTSTNTL  180
LEECNVSIER SGKATGESDQ WTHHHHDHHH HHHHHX
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008364689.29e-53WUSCHEL-related homeobox 1-like
SwissprotQ6X7K03e-40WOX1_ARATH; WUSCHEL-related homeobox 1
TrEMBLA0A2P5E0Q33e-64A0A2P5E0Q3_TREOI; Homeodomain transcription factor
STRINGXP_008364689.13e-52(Malus domestica)
STRINGXP_008374987.14e-52(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.11e-40WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]