PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK07924.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ARR-B
Protein Properties Length: 586aa    MW: 65615.6 Da    PI: 5.2065
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK07924.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like772.4e-24198251155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  PK07924.1 198 KARVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 251
                68*******************.9*******************************8 PP
2Response_reg78.52.3e-26191271109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+  ++l+++l+k  y ev+++  +++al+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga 
     PK07924.1  19 VLVVDDDPTWIKILEKMLKKCAY-EVTTCGLATDALRLLRERKdgFDIVVSDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGAC 113
                   89*********************.***************999999**********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ ++el +
     PK07924.1 114 DYLLKPIRMKELKN 127
                   **********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.3E-1461545IPR017053Response regulator B-type, plant
SuperFamilySSF521727.97E-3516158IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.4E-4316142No hitNo description
SMARTSM004481.3E-3017129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.22118133IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-2319127IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.24E-2920133No hitNo description
Gene3DG3DSA:1.10.10.608.7E-28196256IPR009057Homeodomain-like
SuperFamilySSF466894.66E-17196255IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-21198251IPR006447Myb domain, plants
PfamPF002491.8E-7200250IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MENGFSSPRN DTFPAGLRVL VVDDDPTWIK ILEKMLKKCA YEVTTCGLAT DALRLLRERK  60
DGFDIVVSDV NMPDMDGFKL LEHVGLEMDL PVIMMSVDGE TSRVMKGVQH GACDYLLKPI  120
RMKELKNIWQ HVFRKKIHEI RDIESHESIE SIMTRNTSDH SDDGHFLSME DFSSVKKRKD  180
IDNKHDEKDY GDSSSAKKAR VVWSVDLHQK FVKAVNQIGF DKVGPKKILD LMNVPWLTRE  240
NVASHLQKYR LYLSRLQKEK ESDGKTSFGG SNHSDVPLKD PPVSFGLQSS SSIHQNDVLN  300
GSYRICGGNL LLQNVDSSSH EDDLRSIVSE PVVEAKAPAV NLSDSHKNNT SKMSFNHSFA  360
PLESEVNFAA FESGIPAKYS WCEVSEIQFG QEHKPLIHLE NGFTKLPLPD SLHQVHTEPV  420
QSNPSISSKP STAEKALSGP VESKAPYPEY GSNEVSHISP NISTISTLPL TSKSQMVNHQ  480
AFEPIYTSSS TLTTQGSNLC STTDLESVQR NLTFASGSSL ATFDEDLQVL FQGDCFGEEV  540
RNVEFSDYVD PWPMNEVPAH LYDSLRFGYE NSYDPEYAII DQSLLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-17194256163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010100306.10.0two-component response regulator ARR11
SwissprotQ5N6V81e-137ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A2P5F0W50.0A0A2P5F0W5_TREOI; Two-component response regulator
STRINGXP_010100306.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-133response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]