PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK07926.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 591aa    MW: 65838.5 Da    PI: 5.0339
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK07926.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.94.1e-12541589247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +rW+  E++ l d+vk++G+g+Wk+I +t     + Rt+ ++k++w++ 
        PK07926.1 541 KRWSLLEEDALRDGVKKYGKGNWKLILNTYHdlfEERTEVDLKDKWRNM 589
                      59********************************9************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.646535591IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-11536591IPR009057Homeodomain-like
SuperFamilySSF466893.74E-14537590IPR009057Homeodomain-like
SMARTSM007170.0015539591IPR001005SANT/Myb domain
CDDcd116604.21E-19541591No hitNo description
PfamPF002491.8E-8542589IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
XDMDVSRWIL EFLIRSPGKD RLAKDALSVM PVPNNDLRLN KIALLRTIEG EVSDAMVTET  60
ILEKLELVEA LDSRQESGAA AMADSMKGAY CAVALECTVK FLVSGGGKPG EKYLNALNRV  120
WRGRVRQLEM SGKSKLFTKE LKRCWDEVEA AISDNSVCKK FLVMNTRNEA VRLVLEYLKE  180
AWALLGPSFV EWAAKLTTEH RGLVRLGDGG VRSRGVESVE DEPEVGIERV DEEIEVQEPT  240
AVKLASLGGG VSGMPELISE FRDQEDRTGT SKDQVCNKDE EIEVQEPTAV KLASPGGGLS  300
VNGMPELTSE FRDQEDRTGT SKVCNKDTDV DVTLPDSGTA TFVKEIQSEK VVTRNKQVAI  360
NKRHRGRVRI AEDENFETNE SENRNSISTP EVDRVREALK SSTSELQAVV TDPLPEASRV  420
AEAVATDLAT KNVSHENPLE SQKGTEADAT TNPCIEKNTN SNDPTPGNPS TSHQNNNPQP  480
SLMARNSTAH TYEWDDSIDS IDDSDPRANA SRLNPTRSKR KAVSLLKKDE STKFTKRRKV  540
KRWSLLEEDA LRDGVKKYGK GNWKLILNTY HDLFEERTEV DLKDKWRNMT R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1518538KRKAVSLLKKDESTKFTKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024029310.11e-170uncharacterized protein LOC21393956 isoform X1
TrEMBLA0A2P5CYN70.0A0A2P5CYN7_TREOI; GAMYB transcription factor
STRINGXP_010108474.11e-157(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.14e-16TRF-like 5