PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK08039.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

FAR1

Protein Properties

Length: 761aa MW: 88118.6 Da PI: 4.766

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK08039.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.1	1.3e-22	150	233	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn YAk++GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w+v++++leHnH + PK08039.1 150 NFYNCYAKDIGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTVKDAN-----SRRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHLF 233 6***************************************99988.....8999*****************************77 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.2E-20	150	233	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-26	357	449	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.817	643	679	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.7E-6	654	681	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 761 aa Download sequence Send to blast
MTGDTAFSPN DPSLSSNANL HITIDEGSQN SENLLEEEGN DLENDCEQLF EIDGDDHENG 60 MDGKNDHYFD IESNGHEDDG DDTNEHLFDI DGNGHENHVD EQLFDIEGSG HEDNKDDASL 120 VDDGSGTSQR KVYPPPVVGM EFESYDDAYN FYNCYAKDIG FAIRVKSSWT KRNSKEKRGA 180 VLCCNCEGFK TVKDANSRRK ETRTGCLAMI RLRLVESNRW RVDEVKLEHN HLFDPERAQN 240 SKSHKRIDSG AKRKVEPTLD VEVRTIKLYR APAIDTVSYG SSNSNKGEIN SQCDRSRSLN 300 LKLRNGDVLL IQNFFCRAQL VDPNFFYVMD FNDEGLLRNV FWIDSRSRAA YAHFNDVVSF 360 DTTCLSFNYE IPLIAFVGVN HHGQNILLGC GLLADETLET YIWLFRAWLT CLSGRPPQTI 420 ITNQSKAMQS AIAEVFPRAH HRLCLANVVQ SILESLGALQ DYEAFQMFFI RIVYDSLKVE 480 EFELAWEDMI QRFGLRDQEW LRIFYDDRER WVPVYSKDIF FAGLSYFQKD ESVSSIFDSY 540 VHDKTSLKDF FDIYDIFLEK KRQKEALDDF ESRDLSPILK TRCYYELQLS QLYTKEVFRK 600 FQDEVVMMSS CFNITQILTN GTIATYTVKE SEGGEIMRDV RNFEVVYDKT GAEIRCICSC 660 FNFKGFLCRH ALCVLNYNGV EEIPFQYLLP RWRKDFKRLY VPDFGSNNVD ITNPVQWFDH 720 LYKRAMQVVE EGMNSQDHYM VAWQAFKESL NKVRLVADKH V

Sequence ? help Back to Top

Protein Sequence Length: 761 aa Download sequence Send to blast

MTGDTAFSPN DPSLSSNANL HITIDEGSQN SENLLEEEGN DLENDCEQLF EIDGDDHENG  60
MDGKNDHYFD IESNGHEDDG DDTNEHLFDI DGNGHENHVD EQLFDIEGSG HEDNKDDASL  120
VDDGSGTSQR KVYPPPVVGM EFESYDDAYN FYNCYAKDIG FAIRVKSSWT KRNSKEKRGA  180
VLCCNCEGFK TVKDANSRRK ETRTGCLAMI RLRLVESNRW RVDEVKLEHN HLFDPERAQN  240
SKSHKRIDSG AKRKVEPTLD VEVRTIKLYR APAIDTVSYG SSNSNKGEIN SQCDRSRSLN  300
LKLRNGDVLL IQNFFCRAQL VDPNFFYVMD FNDEGLLRNV FWIDSRSRAA YAHFNDVVSF  360
DTTCLSFNYE IPLIAFVGVN HHGQNILLGC GLLADETLET YIWLFRAWLT CLSGRPPQTI  420
ITNQSKAMQS AIAEVFPRAH HRLCLANVVQ SILESLGALQ DYEAFQMFFI RIVYDSLKVE  480
EFELAWEDMI QRFGLRDQEW LRIFYDDRER WVPVYSKDIF FAGLSYFQKD ESVSSIFDSY  540
VHDKTSLKDF FDIYDIFLEK KRQKEALDDF ESRDLSPILK TRCYYELQLS QLYTKEVFRK  600
FQDEVVMMSS CFNITQILTN GTIATYTVKE SEGGEIMRDV RNFEVVYDKT GAEIRCICSC  660
FNFKGFLCRH ALCVLNYNGV EEIPFQYLLP RWRKDFKRLY VPDFGSNNVD ITNPVQWFDH  720
LYKRAMQVVE EGMNSQDHYM VAWQAFKESL NKVRLVADKH V

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010097192.1	0.0	protein FAR1-RELATED SEQUENCE 8 isoform X1
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	W9RSB0	0.0	W9RSB0_9ROSA; Protein FAR1-RELATED SEQUENCE 8
STRING	XP_010097192.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]