PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK08180.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NAC
Protein Properties Length: 205aa    MW: 23926 Da    PI: 4.7328
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK08180.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM76.85.2e-2451371128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekew.yfFskrdkkyat.gkrknratksgyWkatgkdkevlskk 96 
                lppG+ F P++eel+v+yL+kkv+g++l++  +i+e ++y ++Pw+L +   ++  ++ + y Fs+ +k ++  +kr++r++ +g  +++    +++s++
  PK08180.1   5 LPPGYVFAPSEEELIVDYLEKKVNGHSLPM--HINEDNVYLYNPWQLIQkyPLQRFDEGClYLFSPLHKLSEGgNKRPSRSAGDGHYRSSRC-YPIISSE 101
                79*************************999..7**************74233333344445****9999877536799**99***9997765.777777* PP

        NAM  97 gelvglkktLvfy....kgrapkgektdWvmheyrl 128
                g+++g  + L fy    ++++ + +kt+W++ eyrl
  PK08180.1 102 GNTIGYETHLKFYmgkpSNKDDDDNKTNWLLTEYRL 137
                *************554444555667*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-324162IPR003441NAC domain
PROSITE profilePS5100531.845162IPR003441NAC domain
PfamPF023651.1E-136137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MTKNLPPGYV FAPSEEELIV DYLEKKVNGH SLPMHINEDN VYLYNPWQLI QKYPLQRFDE  60
GCLYLFSPLH KLSEGGNKRP SRSAGDGHYR SSRCYPIISS EGNTIGYETH LKFYMGKPSN  120
KDDDDNKTNW LLTEYRLMNK QPNNNNNNKT LDECVLCKLY YNGDGEENED EDEDEESRKR  180
KRFTTSTTTE DQKEEDNKNN DPLSX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-30416016163NO APICAL MERISTEM PROTEIN
1ut4_B9e-30416016163NO APICAL MERISTEM PROTEIN
1ut7_A9e-30416016163NO APICAL MERISTEM PROTEIN
1ut7_B9e-30416016163NO APICAL MERISTEM PROTEIN
3swm_A8e-30416019166NAC domain-containing protein 19
3swm_B8e-30416019166NAC domain-containing protein 19
3swm_C8e-30416019166NAC domain-containing protein 19
3swm_D8e-30416019166NAC domain-containing protein 19
3swp_A8e-30416019166NAC domain-containing protein 19
3swp_B8e-30416019166NAC domain-containing protein 19
3swp_C8e-30416019166NAC domain-containing protein 19
3swp_D8e-30416019166NAC domain-containing protein 19
4dul_A9e-30416016163NAC domain-containing protein 19
4dul_B9e-30416016163NAC domain-containing protein 19
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.15e-29NAC domain containing protein 3