PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK08191.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GRAS
Protein Properties Length: 164aa    MW: 17875.7 Da    PI: 10.0435
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK08191.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS111.98.7e-357163225374
       GRAS 225 devLklvkslsPkvvvvveqeadhnse......sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae..rrerhetlekWr 316
                  +L  v+++sP vvv+v+ e   +++      sF + f+  le+ys++++sl+a +   se+ +k+E+++l+++iv +v ++ a+   +   ++ ++ r
  PK08191.1   7 GGFLGEVRRVSPAVVVFVDGEGWGGEPgtapttSFRRNFVGGLEFYSMVLESLDAAM-VGSEWVRKIEAFVLKPRIVMAVEAASAAaaAVGSGRRTASFR 105
                569******************655444444566********************8885.799*******************9887763366788999**** PP

       GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                e+++ aG++pv+ls +a  qa++ll kv+++g++v +++++lvl+W++r+Lv++S+Wr
  PK08191.1 106 EMFHGAGMRPVQLSRFADFQAECLLGKVQVRGFHVAKRQAELVLCWHERALVATSVWR 163
                *********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098512.5161143IPR005202Transcription factor GRAS
PfamPF035143.0E-327163IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
VLRHHGGGFL GEVRRVSPAV VVFVDGEGWG GEPGTAPTTS FRRNFVGGLE FYSMVLESLD  60
AAMVGSEWVR KIEAFVLKPR IVMAVEAASA AAAAVGSGRR TASFREMFHG AGMRPVQLSR  120
FADFQAECLL GKVQVRGFHV AKRQAELVLC WHERALVATS VWRC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010099836.14e-73scarecrow-like protein 15
SwissprotO232101e-54SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A2P5D3401e-74A0A2P5D340_PARAD; GRAS transcription factor
STRINGXP_010099836.12e-72(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.14e-45GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]