PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK08266.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WRKY
Protein Properties Length: 221aa    MW: 25354.1 Da    PI: 4.5992
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK08266.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY48.41.9e-155472059
               S-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY 20 fprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
               f rsYYrCt++   +C+++k+v+r++edp ++eitY+g+H ++
  PK08266.1  5 FCRSYYRCTFRntqSCWATKQVQRTDEDPFLFEITYRGTHSCS 47
               68*******998889*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007744.9E-12448IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-13548IPR003657WRKY domain
PfamPF031065.7E-13546IPR003657WRKY domain
SuperFamilySSF1182908.5E-13548IPR003657WRKY domain
PROSITE profilePS5081111.554745IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MLPLFCRSYY RCTFRNTQSC WATKQVQRTD EDPFLFEITY RGTHSCSQAS NSVQPPKSPE  60
KKDQKPNNQN MIPQQQQFEQ FNPKFQSNLR VITDELGHRE VMESPFSFPS SSFGCMNVKN  120
EDSFTPLMLD NETFLGGFSQ SFISPATPES NYYQISPFQI NSPTAFHNVQ QQRSESDHTE  180
IISANNSVTN SPIPEMNFSL DPMNNDPNFP LTLLDFTLDS I
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104968.17e-88probable WRKY transcription factor 53
TrEMBLA0A2P5EAA81e-113A0A2P5EAA8_TREOI; WRKY domain containing protein
STRINGXP_010104968.13e-87(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.12e-22WRKY family protein