PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK08294.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 309aa    MW: 35161.9 Da    PI: 8.5484
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK08294.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.82.4e-15240264226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                kte+C+ +++tG+C+yGd+C+FaHg
  PK08294.1 240 KTEICNKWQETGECPYGDNCQFAHG 264
                9***********************9 PP
2zf-CCCH201.2e-06277301125
                --S---SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                ykt  Cr  + +  C+yG rC+F H
  PK08294.1 277 YKTQVCRMVLNGAVCPYGHRCHFLH 301
                8999999999988************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.3E-18234271IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-11236270IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.108238266IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-9238265IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-12240264IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-12272301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-8273302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.742276304IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4276303IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
STDSLSFIDL FELKMQSQYS INNGVVSSNS SFFLGGDDEF DSDSSNSSTT ATAAAIDDHH  60
RRRRLYYYNS LLVQERQEMV NRRSLCLNRL REVSVEVASL RNENSYLRSI NVELRKQFRL  120
LLQSALQNRL GFGNGVWNRD EEEGDDRDIY SRLPKSISVK SEDYLKVSAP AVIKNGGRSS  180
RDSSSRSRNC TTATLQNLVK QKVYIGGGNK KKESHNHNHG DVNGNENPIE VDVYKQGALK  240
TEICNKWQET GECPYGDNCQ FAHGVDELRP VMRHPRYKTQ VCRMVLNGAV CPYGHRCHFL  300
HALPPRHHX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A8e-22240301566Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015876715.14e-80zinc finger CCCH domain-containing protein 15, partial
TrEMBLA0A2P5DKE01e-106A0A2P5DKE0_PARAD; Zinc finger, CCCH-type
STRINGXP_009357366.11e-73(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.16e-60C3H family protein