PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK08327.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

C3H

Protein Properties

Length: 148aa MW: 17299.5 Da PI: 6.0781

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK08327.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.3	3.4e-10	87	111	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt lC++f+ G+C++G+ C++aHg PK08327.1 87 YKTQLCKHFSS-GYCNRGEDCTYAHG 111 9*******9.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.3E-14	84	117	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.3E-8	86	112	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.49E-9	86	116	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	17.169	86	113	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.4E-8	87	111	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MAEEQPFQFP KIFDHVHELN MLSEPYSKIS KYLSSIMLET STLIYSEPTE FDRVIVWIVG 60 ASDAVKEGLE RVHQLLTDEQ KEEDKMYKTQ LCKHFSSGYC NRGEDCTYAH GDHELRQEAS 120 MYWGLTEMHG FSTKIRCVTR QSSPHRRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	4e-07	C3H family protein