PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK08508.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family DBB
Protein Properties Length: 197aa    MW: 21853.4 Da    PI: 6.8225
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK08508.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.72e-07433534
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                C+ +e+  ++ fC  ++  lC++C ++ H
  PK08508.1  4 LCDACESAAAIVFCAADEAALCRSCDEKVH 33
               7**************************998 PP
2zf-B_box26.81e-085291237
   zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
               e ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  PK08508.1 52 EVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91
               789***************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.296147IPR000315B-box-type zinc finger
SMARTSM003363.5E-8147IPR000315B-box-type zinc finger
CDDcd000218.97E-6345No hitNo description
PfamPF006437.6E-6342IPR000315B-box-type zinc finger
SMARTSM003365.6E-115196IPR000315B-box-type zinc finger
PROSITE profilePS501198.9445196IPR000315B-box-type zinc finger
PfamPF006431.6E-65285IPR000315B-box-type zinc finger
CDDcd000212.56E-65484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MRTLCDACES AAAIVFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLANP SEVPRCDICE  60
NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKPGA GNVEEPGSNP  120
GSDQVEAARR GQNHQQPCSK MTGEENQQQQ NHNRVSPVRL QEANADGHTH TKRDNKMIDL  180
NMKPHKFHEQ SSNNQDL
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024032860.11e-103B-box zinc finger protein 18 isoform X2
SwissprotC0SVM59e-76BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A2P5DE441e-113A0A2P5DE44_PARAD; B-box-type zinc finger
STRINGXP_010113384.11e-101(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.14e-78DBB family protein