PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK08522.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family FAR1
Protein Properties Length: 791aa    MW: 90642 Da    PI: 6.6112
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK08522.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1100.41.8e-3184175291
       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+  +++ +r+r+ tr+gCka+l vk++++gkw+v+ ++ eHnHel+p
  PK08522.1  84 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKMQNSGKWVVSGFVREHNHELVP 175
                9***************************************998888545677889***********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.1E-3084175IPR004330FAR1 DNA binding domain
PfamPF105519.3E-33296388IPR018289MULE transposase domain
PfamPF044345.8E-13564610IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.276576612IPR007527Zinc finger, SWIM-type
SMARTSM005752.6E-9587614IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    Send to blast
MDNEVIEFDI GLGAGEGGSG REGDDDGLDI EHHVDDEEMV DSPPFNSGGG FGGSGEIYLP  60
EGDLLDLEPS EGMEFESEEA AKAFYNSYAR RVGFSTRVSS SRRSRRDGAI IQRQFVCAKE  120
GFRNLNEKRT KDREIKRPRT ITRVGCKASL SVKMQNSGKW VVSGFVREHN HELVPPDQVH  180
CLRSHRQISG PAKTLIDTLQ AAGMGPRRIM SALIKEYGGI SKVGFTEVDC RNYMRNNRQR  240
SLEGDIQLLL DYLRQMQAEN SNFFFAVQGE EDQSSGNVFW ADPKARTNYN YFGDTVTFDT  300
TYRSNRYRLP FAPFTGVNHH GQPVLFGCAF LINESESSFV WLFKTWLTAM SGRPPLSITT  360
DHDAVIRAAI MQVFPETRHR FCKWHIFKKC QEKLSHVFLE HPTFEADFHK CVNLTESIEE  420
FESCWLSLVD RYELRDHDWL QTIYSARRQW VPVYLRDTFF AEMSITQRSD SMNSYFDGYI  480
NASTNLNQFF KLYEKALESR NEKEVKADYD TMNTSPFLKT PSPMEKQVSE LYTRKLFARF  540
QEELVGTLTF MASKAEDDGE VITYQVSKYG EDHKAYYVKF NVLEMKASCS CQMFEFSGLL  600
CRHILAVFRV TNVLTLPAHY ILKRWTRNAK SSVILEEHCS DVYTNYLESH TVRYNTLRHE  660
AFKFVDEGAK TSETYEAALI ALQKAAEKVD HAIKNSSKSA MLNGRFRGNS TVDASRVNHT  720
SGNKEVSSGQ HMSEDDMDKR IRELTNELEN ANKKCEVYRA NLLSVLKDIE DHKLQLSIKV  780
QNIKISMKDG L
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015892966.10.0protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2P6PTI90.0A0A2P6PTI9_ROSCH; Putative transcription factor FAR family
STRINGXP_004290092.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]