PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK08578.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 254aa    MW: 29775.2 Da    PI: 9.4408
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK08578.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.8e-1810791686
               EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TT...HHHHHHHHT--TT-EEEEEE-S CS
         B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkG...WkeFvkangLkegDfvvFkldg 86
                ++p kfae+++  k+ +k+++++de+g+ W++ +  +kk +++++ +G   W+eFvk+++Lk gDf+vFk+  
  PK08578.1 10 SWIPPKFAEKFM--KRIPKEVKVKDENGKNWSFGM--KKKEEKVYIVNGkcqWEEFVKEHKLKRGDFLVFKYYT 79
               48*********8..45899****************..99*999999977777*******************653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.72195IPR003340B3 DNA binding domain
SMARTSM010191.1E-6195IPR003340B3 DNA binding domain
PfamPF023628.1E-161079IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-171196IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-171199IPR015300DNA-binding pseudobarrel domain
CDDcd100175.91E-171292No hitNo description
Gene3DG3DSA:2.40.330.102.0E-9156242IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.71156254IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-8157239IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.036159246IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
LDRPMCSKES WIPPKFAEKF MKRIPKEVKV KDENGKNWSF GMKKKEEKVY IVNGKCQWEE  60
FVKEHKLKRG DFLVFKYYTS IANSNFFHVK IYACNGCNKK QLHHKTTITQ PGEHDEDIKP  120
TDEELEKVGE NFSNEEEYGD VKTNTTTPPS NSISSNLHFL TIINDNTRKK VKIPSGVVSK  180
VKLEEKILLH CKNNELFGVG ITYDKDGQAF ISSKWSHFLK RKNLNNNDKC LFEFLINPKF  240
NICREMKVYI IHTW
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143221518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.14e-12B3 family protein