PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK08629.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NAC
Protein Properties Length: 393aa    MW: 43353.6 Da    PI: 7.8305
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK08629.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.99.9e-54211481128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrFhPtdeelvv+yLkkkv + +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl++ ++++
  PK08629.1  21 LPPGFRFHPTDEELVVHYLKKKVISAPLPV-SIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSgGSQK 119
                79****************************.89***************988899***************************************9977888 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg+kk Lvfy g+ pkg kt+W+mheyrl
  PK08629.1 120 VGVKKALVFYGGKPPKGIKTNWIMHEYRL 148
                ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-6417183IPR003441NAC domain
PROSITE profilePS5100562.21321183IPR003441NAC domain
PfamPF023653.9E-2822148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MESTDSSAGS QQLQNHHQPN LPPGFRFHPT DEELVVHYLK KKVISAPLPV SIIAEVDLYK  60
FDPWELPAKA TFGEQEWYFF SPRDRKYPNG ARPNRAATSG YWKATGTDKP VLTSGGSQKV  120
GVKKALVFYG GKPPKGIKTN WIMHEYRLAE NKAINKPPPG CDLGNKKNSL RLDDWVLCRI  180
YKKNNTNRAV MDHERDQEAM EELLGPMNSN NHNHNHSHNN IPVPHPMGPH NGKLQLLLPK  240
AATLLNYGAL NENDHNLFDG MLSNDHANIN SNTTNTTNNA SLLLPPSSNM SLKRSLIHGL  300
YWPNEIVDDE EAAAAGPLSS SSSKRLQLDD SCTAATTTTS MGEGNQSTSI ASLLSQLPNQ  360
TASLHQQTML GALGGSDGLF RGSYQLPGMH WYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-7461862168NO APICAL MERISTEM PROTEIN
1ut4_B3e-7461862168NO APICAL MERISTEM PROTEIN
1ut7_A3e-7461862168NO APICAL MERISTEM PROTEIN
1ut7_B3e-7461862168NO APICAL MERISTEM PROTEIN
4dul_A3e-7461862168NAC domain-containing protein 19
4dul_B3e-7461862168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089502.11e-173NAC transcription factor 56
SwissprotQ9LD441e-116NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A2P5BA540.0A0A2P5BA54_TREOI; NAC domain containing protein
STRINGXP_010089502.11e-173(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-108NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]