PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK08949.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 100aa    MW: 11115.3 Da    PI: 11.0645
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK08949.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2254.7e-087392222
        AP2  2 gykGVrwdkkrgrWvAeIrdp 22
               +y+GVr+++ +g+++AeIrd 
  PK08949.1 73 HYRGVRRRP-WGKYAAEIRDS 92
               8********.**********3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-97299IPR001471AP2/ERF domain
PROSITE profilePS5103211.19273100IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-67399IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MMLELPFNEN DSQDMVIYQV LNEASMSLST TSVMPRRHPT TATATPSTTP TGAGGGNGNH  60
HSLPVRNITM KKHYRGVRRR PWGKYAAEIR DSTRQGARVX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023908481.16e-29pathogenesis-related genes transcriptional activator PTI5-like
TrEMBLA0A2P5DXA73e-38A0A2P5DXA7_PARAD; AP2/ERF transcription factor
STRINGPOPTR_0011s06010.12e-26(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93393042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.14e-17ethylene response factor 1