PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK09048.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 150aa    MW: 16847.9 Da    PI: 8.7151
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK09048.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.53.6e-115779527
               --SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                C++f +tG+C+yGd+Ck+ H++
  PK09048.1 57 VCNRFVKTGICQYGDSCKYLHPK 79
               6********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004510.0045338IPR003604Zinc finger, U1-type
SuperFamilySSF576675.56E-16460No hitNo description
PfamPF062203.2E-9537IPR013085Zinc finger, U1-C type
PROSITE profilePS5010313.5915280IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-55479IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-75681IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-95779IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-65778IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MPLGKYHCDY CDKEFQDSPF ARKRHLQGLQ HLRAKALWYD SFKDQNQVYA EGFGNGVCNR  60
FVKTGICQYG DSCKYLHPKN TVQNLNNSQG RPGFVGSNQS PIFQGNQVIG TNSMSGDTVR  120
DRMGISWGNL PPSLKPPPEG GYPSLPFVDW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024022720.13e-83zinc finger CCCH domain-containing protein 3 isoform X1
SwissprotQ0JP112e-43C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A2P5FKJ02e-83A0A2P5FKJ0_TREOI; Zinc finger protein
STRINGEMJ074902e-75(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119592833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.14e-48C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]